RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 WAPLQ7Z5K2 1190 aa28.11■■■□□ 2.09
SHMT1-202ENST00000352886 BCL2L13Q9BXK5 485 aa28.11■■■□□ 2.09
SHMT1-202ENST00000352886 C8orf34Q49A92 452 aa28.09■■■□□ 2.09
SHMT1-202ENST00000352886 MAPK8IP3Q9UPT6 1336 aa28.07■■■□□ 2.08
SHMT1-202ENST00000352886 TMPOP42166 694 aaKnown RBP28.07■■■□□ 2.08
SHMT1-202ENST00000352886 TNNQ9UQP3 1299 aa28.06■■■□□ 2.08
SHMT1-202ENST00000352886 RLBP1P12271 317 aa28.05■■■□□ 2.08
SHMT1-202ENST00000352886 DIAPH1O60610 1272 aaKnown RBP28.04■■■□□ 2.08
SHMT1-202ENST00000352886 NRXN3Q9Y4C0 1643 aa28.04■■■□□ 2.08
SHMT1-202ENST00000352886 TSR2Q969E8 191 aaKnown RBP28.03■■■□□ 2.08
SHMT1-202ENST00000352886 PNPLA6Q8IY17 1366 aa28.03■■■□□ 2.08
SHMT1-202ENST00000352886 ATP7BP35670 1465 aa28.03■■■□□ 2.08
SHMT1-202ENST00000352886 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.03■■■□□ 2.08
SHMT1-202ENST00000352886 TRIM35Q9UPQ4 493 aa28.03■■■□□ 2.08
SHMT1-202ENST00000352886 DDRGK1Q96HY6 314 aa28.02■■■□□ 2.08
SHMT1-202ENST00000352886 KIF13AQ9H1H9 1805 aa28.01■■■□□ 2.07
SHMT1-202ENST00000352886 AAMPQ13685 434 aa28■■■□□ 2.07
SHMT1-202ENST00000352886 ESF1Q9H501 851 aaKnown RBP27.98■■■□□ 2.07
SHMT1-202ENST00000352886 ZMYM3Q14202 1370 aa27.98■■■□□ 2.07
SHMT1-202ENST00000352886 CT47B1P0C2W7 299 aaPredicted RBP27.98■■■□□ 2.07
SHMT1-202ENST00000352886 METP08581 1390 aa27.97■■■□□ 2.07
SHMT1-202ENST00000352886 VIRMAQ69YN4 1812 aaKnown RBP27.97■■■□□ 2.07
SHMT1-202ENST00000352886 RIPK4P57078 832 aa27.97■■■□□ 2.07
SHMT1-202ENST00000352886 EXOSC9Q06265 439 aaKnown RBP27.97■■■□□ 2.07
SHMT1-202ENST00000352886 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.97■■■□□ 2.07
SHMT1-202ENST00000352886 MAP2P11137 1827 aaKnown RBP27.96■■■□□ 2.07
SHMT1-202ENST00000352886 PMFBP1Q8TBY8 1022 aa27.96■■■□□ 2.07
SHMT1-202ENST00000352886 PNNQ9H307 717 aaKnown RBP27.96■■■□□ 2.07
SHMT1-202ENST00000352886 FBLN1P23142 703 aa27.96■■■□□ 2.07
SHMT1-202ENST00000352886 PCDHB15Q9Y5E8 787 aa27.96■■■□□ 2.07
SHMT1-202ENST00000352886 PPM1GO15355 546 aaPredicted RBP27.95■■■□□ 2.06
SHMT1-202ENST00000352886 CDC42BPGQ6DT37 1551 aa27.95■■■□□ 2.06
SHMT1-202ENST00000352886 ZKSCAN2Q63HK3 967 aa27.94■■■□□ 2.06
SHMT1-202ENST00000352886 WASLO00401 505 aaPredicted RBP27.94■■■□□ 2.06
SHMT1-202ENST00000352886 POLKQ9UBT6 870 aa27.94■■■□□ 2.06
SHMT1-202ENST00000352886 LRRC7Q96NW7 1537 aa27.94■■■□□ 2.06
SHMT1-202ENST00000352886 IL16Q14005 1332 aa27.93■■■□□ 2.06
SHMT1-202ENST00000352886 PPIP5K1Q6PFW1 1433 aa27.93■■■□□ 2.06
SHMT1-202ENST00000352886 TXNDC2Q86VQ3 553 aa27.92■■■□□ 2.06
SHMT1-202ENST00000352886 SMC4Q9NTJ3 1288 aa27.92■■■□□ 2.06
SHMT1-202ENST00000352886 LAS1LQ9Y4W2 734 aaKnown RBP27.92■■■□□ 2.06
SHMT1-202ENST00000352886 RTL5Q5HYW3 569 aaPredicted RBP27.92■■■□□ 2.06
SHMT1-202ENST00000352886 FCHSD2O94868 740 aa27.91■■■□□ 2.06
SHMT1-202ENST00000352886 MVPQ14764 893 aaKnown RBP27.91■■■□□ 2.06
SHMT1-202ENST00000352886 CPSF1Q10570 1443 aaKnown RBP27.91■■■□□ 2.06
SHMT1-202ENST00000352886 FTSJ3Q8IY81 847 aaKnown RBP27.91■■■□□ 2.06
SHMT1-202ENST00000352886 EDC4Q6P2E9 1401 aaKnown RBP27.9■■■□□ 2.06
SHMT1-202ENST00000352886 KNDC1Q76NI1 1749 aa27.9■■■□□ 2.06
SHMT1-202ENST00000352886 DZIP1LQ8IYY4 767 aaKnown RBP27.9■■■□□ 2.06
SHMT1-202ENST00000352886 DEKP35659 375 aaKnown RBP27.88■■■□□ 2.05
SHMT1-202ENST00000352886 SSH1Q8WYL5 1049 aa27.88■■■□□ 2.05
SHMT1-202ENST00000352886 PRKAR2BP31323 418 aa27.88■■■□□ 2.05
SHMT1-202ENST00000352886 RSPH6AQ9H0K4 717 aa27.88■■■□□ 2.05
SHMT1-202ENST00000352886 FAM135BQ49AJ0 1406 aa27.87■■■□□ 2.05
SHMT1-202ENST00000352886 HDGFP51858 240 aaKnown RBP27.86■■■□□ 2.05
SHMT1-202ENST00000352886 NME9Q86XW9 330 aa27.86■■■□□ 2.05
SHMT1-202ENST00000352886 TNRQ92752 1358 aa27.86■■■□□ 2.05
SHMT1-202ENST00000352886 NUDT16Q96DE0 195 aaKnown RBP27.86■■■□□ 2.05
SHMT1-202ENST00000352886 TRIM27P14373 513 aa27.85■■■□□ 2.05
SHMT1-202ENST00000352886 NEFMP07197 916 aa27.84■■■□□ 2.05
SHMT1-202ENST00000352886 RWDD1Q9H446 243 aaPredicted RBP27.84■■■□□ 2.05
SHMT1-202ENST00000352886 EMILIN1Q9Y6C2 1016 aa27.84■■■□□ 2.05
SHMT1-202ENST00000352886 TECPR2O15040 1411 aa27.84■■■□□ 2.05
SHMT1-202ENST00000352886 MON2Q7Z3U7 1717 aa27.84■■■□□ 2.05
SHMT1-202ENST00000352886 NCKAP5LQ9HCH0 1330 aa27.84■■■□□ 2.05
SHMT1-202ENST00000352886 CPS1P31327 1500 aa27.83■■■□□ 2.05
SHMT1-202ENST00000352886 SLC4A3P48751 1232 aa27.83■■■□□ 2.05
SHMT1-202ENST00000352886 UBR1Q8IWV7 1749 aa27.82■■■□□ 2.04
SHMT1-202ENST00000352886 ZRANB1Q9UGI0 708 aa27.82■■■□□ 2.04
SHMT1-202ENST00000352886 HMOX1P09601 288 aa27.82■■■□□ 2.04
SHMT1-202ENST00000352886 CCDC61Q9Y6R9 512 aa27.82■■■□□ 2.04
SHMT1-202ENST00000352886 ATF7IPQ6VMQ6 1270 aa27.81■■■□□ 2.04
SHMT1-202ENST00000352886 SIRT1Q96EB6 747 aa27.81■■■□□ 2.04
SHMT1-202ENST00000352886 DAXXQ9UER7 740 aaPredicted RBP27.81■■■□□ 2.04
SHMT1-202ENST00000352886 PDZRN3Q9UPQ7 1066 aa27.81■■■□□ 2.04
SHMT1-202ENST00000352886 NOB1Q9ULX3 412 aaKnown RBP27.8■■■□□ 2.04
SHMT1-202ENST00000352886 TMEM2Q9UHN6 1383 aa27.8■■■□□ 2.04
SHMT1-202ENST00000352886 ITSN1Q15811 1721 aa27.8■■■□□ 2.04
SHMT1-202ENST00000352886 AKAP12Q02952 1782 aa27.8■■■□□ 2.04
SHMT1-202ENST00000352886 CDK12Q9NYV4 1490 aaPredicted RBP27.8■■■□□ 2.04
SHMT1-202ENST00000352886 PHACTR3Q96KR7 559 aa27.79■■■□□ 2.04
SHMT1-202ENST00000352886 ITPRIPQ8IWB1 547 aa27.78■■■□□ 2.04
SHMT1-202ENST00000352886 IL13P35225 146 aa27.78■■■□□ 2.04
SHMT1-202ENST00000352886 COG3Q96JB2 828 aa27.78■■■□□ 2.04
SHMT1-202ENST00000352886 AATKQ6ZMQ8 1374 aa27.77■■■□□ 2.04
SHMT1-202ENST00000352886 NFE2L2Q16236 605 aa27.77■■■□□ 2.04
SHMT1-202ENST00000352886 DDX19BQ9UMR2 479 aa27.77■■■□□ 2.04
SHMT1-202ENST00000352886 C3P01024 1663 aa27.76■■■□□ 2.03
SHMT1-202ENST00000352886 KIF16BQ96L93 1317 aa27.76■■■□□ 2.03
SHMT1-202ENST00000352886 USP19O94966 1318 aa27.75■■■□□ 2.03
SHMT1-202ENST00000352886 SEC24BO95487 1268 aa27.75■■■□□ 2.03
SHMT1-202ENST00000352886 PRR36Q9H6K5 1346 aa27.74■■■□□ 2.03
SHMT1-202ENST00000352886 ROBO2Q9HCK4 1378 aa27.74■■■□□ 2.03
SHMT1-202ENST00000352886 RRS1Q15050 365 aaKnown RBP27.73■■■□□ 2.03
SHMT1-202ENST00000352886 USP35Q9P2H5 1018 aa27.73■■■□□ 2.03
SHMT1-202ENST00000352886 ALDH1L2Q3SY69 923 aa27.73■■■□□ 2.03
SHMT1-202ENST00000352886 TMEM57Q8N5G2 664 aa27.72■■■□□ 2.03
SHMT1-202ENST00000352886 IPO8O15397 1037 aaKnown RBP27.72■■■□□ 2.03
SHMT1-202ENST00000352886 THUMPD2Q9BTF0 503 aaKnown RBP27.72■■■□□ 2.03
SHMT1-202ENST00000352886 ADAMTS13Q76LX8 1427 aa27.72■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms