RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 NRXN3Q9Y4C0 1643 aa28.54■■■□□ 2.16
UPF3A-201ENST00000351487 CT47B1P0C2W7 299 aaPredicted RBP28.53■■■□□ 2.16
UPF3A-201ENST00000351487 NBR1Q14596 966 aa28.53■■■□□ 2.16
UPF3A-201ENST00000351487 FRAT1Q92837 279 aaPredicted RBP28.53■■■□□ 2.16
UPF3A-201ENST00000351487 TMPOP42166 694 aaKnown RBP28.5■■■□□ 2.15
UPF3A-201ENST00000351487 RGS3P49796 1198 aa28.5■■■□□ 2.15
UPF3A-201ENST00000351487 CABP1Q9NZU7 370 aa28.5■■■□□ 2.15
UPF3A-201ENST00000351487 U2SURPO15042 1029 aaKnown RBP28.49■■■□□ 2.15
UPF3A-201ENST00000351487 KNDC1Q76NI1 1749 aa28.48■■■□□ 2.15
UPF3A-201ENST00000351487 IL16Q14005 1332 aa28.47■■■□□ 2.15
UPF3A-201ENST00000351487 MAPK8IP3Q9UPT6 1336 aa28.47■■■□□ 2.15
UPF3A-201ENST00000351487 RLBP1P12271 317 aa28.47■■■□□ 2.15
UPF3A-201ENST00000351487 TRIM35Q9UPQ4 493 aa28.46■■■□□ 2.15
UPF3A-201ENST00000351487 KIF13AQ9H1H9 1805 aa28.45■■■□□ 2.15
UPF3A-201ENST00000351487 DIAPH1O60610 1272 aaKnown RBP28.45■■■□□ 2.15
UPF3A-201ENST00000351487 PMFBP1Q8TBY8 1022 aa28.45■■■□□ 2.14
UPF3A-201ENST00000351487 BCL2L13Q9BXK5 485 aa28.43■■■□□ 2.14
UPF3A-201ENST00000351487 PNNQ9H307 717 aaKnown RBP28.43■■■□□ 2.14
UPF3A-201ENST00000351487 LRRC7Q96NW7 1537 aa28.42■■■□□ 2.14
UPF3A-201ENST00000351487 WAPLQ7Z5K2 1190 aa28.42■■■□□ 2.14
UPF3A-201ENST00000351487 TNNQ9UQP3 1299 aa28.42■■■□□ 2.14
UPF3A-201ENST00000351487 CPSF1Q10570 1443 aaKnown RBP28.41■■■□□ 2.14
UPF3A-201ENST00000351487 MAP2P11137 1827 aaKnown RBP28.41■■■□□ 2.14
UPF3A-201ENST00000351487 ZMYM3Q14202 1370 aa28.41■■■□□ 2.14
UPF3A-201ENST00000351487 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.41■■■□□ 2.14
UPF3A-201ENST00000351487 RTL5Q5HYW3 569 aaPredicted RBP28.4■■■□□ 2.14
UPF3A-201ENST00000351487 TSR2Q969E8 191 aaKnown RBP28.39■■■□□ 2.14
UPF3A-201ENST00000351487 TECPR2O15040 1411 aa28.39■■■□□ 2.14
UPF3A-201ENST00000351487 EDC4Q6P2E9 1401 aaKnown RBP28.39■■■□□ 2.14
UPF3A-201ENST00000351487 ZKSCAN2Q63HK3 967 aa28.39■■■□□ 2.14
UPF3A-201ENST00000351487 PCDHB15Q9Y5E8 787 aa28.38■■■□□ 2.13
UPF3A-201ENST00000351487 FAM135BQ49AJ0 1406 aa28.38■■■□□ 2.13
UPF3A-201ENST00000351487 DEKP35659 375 aaKnown RBP28.38■■■□□ 2.13
UPF3A-201ENST00000351487 MVPQ14764 893 aaKnown RBP28.38■■■□□ 2.13
UPF3A-201ENST00000351487 MON2Q7Z3U7 1717 aa28.37■■■□□ 2.13
UPF3A-201ENST00000351487 CPS1P31327 1500 aa28.37■■■□□ 2.13
UPF3A-201ENST00000351487 FCHSD2O94868 740 aa28.37■■■□□ 2.13
UPF3A-201ENST00000351487 EXOSC9Q06265 439 aaKnown RBP28.37■■■□□ 2.13
UPF3A-201ENST00000351487 MLECQ14165 292 aa28.37■■■□□ 2.13
UPF3A-201ENST00000351487 METP08581 1390 aa28.36■■■□□ 2.13
UPF3A-201ENST00000351487 WASLO00401 505 aaPredicted RBP28.35■■■□□ 2.13
UPF3A-201ENST00000351487 PPM1GO15355 546 aaPredicted RBP28.35■■■□□ 2.13
UPF3A-201ENST00000351487 RIPK4P57078 832 aa28.35■■■□□ 2.13
UPF3A-201ENST00000351487 PPIP5K1Q6PFW1 1433 aa28.35■■■□□ 2.13
UPF3A-201ENST00000351487 POLKQ9UBT6 870 aa28.35■■■□□ 2.13
UPF3A-201ENST00000351487 DZIP1LQ8IYY4 767 aaKnown RBP28.34■■■□□ 2.13
UPF3A-201ENST00000351487 SIRT1Q96EB6 747 aa28.34■■■□□ 2.13
UPF3A-201ENST00000351487 USP35Q9P2H5 1018 aa28.34■■■□□ 2.13
UPF3A-201ENST00000351487 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.33■■■□□ 2.13
UPF3A-201ENST00000351487 AKAP12Q02952 1782 aa28.33■■■□□ 2.13
UPF3A-201ENST00000351487 SMC4Q9NTJ3 1288 aa28.33■■■□□ 2.12
UPF3A-201ENST00000351487 CDK12Q9NYV4 1490 aaPredicted RBP28.32■■■□□ 2.12
UPF3A-201ENST00000351487 RSPH6AQ9H0K4 717 aa28.32■■■□□ 2.12
UPF3A-201ENST00000351487 LAS1LQ9Y4W2 734 aaKnown RBP28.31■■■□□ 2.12
UPF3A-201ENST00000351487 FTSJ3Q8IY81 847 aaKnown RBP28.31■■■□□ 2.12
UPF3A-201ENST00000351487 RWDD1Q9H446 243 aaPredicted RBP28.31■■■□□ 2.12
UPF3A-201ENST00000351487 UBR1Q8IWV7 1749 aa28.31■■■□□ 2.12
UPF3A-201ENST00000351487 ITSN1Q15811 1721 aa28.3■■■□□ 2.12
UPF3A-201ENST00000351487 SSH1Q8WYL5 1049 aa28.3■■■□□ 2.12
UPF3A-201ENST00000351487 AATKQ6ZMQ8 1374 aa28.29■■■□□ 2.12
UPF3A-201ENST00000351487 C3P01024 1663 aa28.29■■■□□ 2.12
UPF3A-201ENST00000351487 TRIM27P14373 513 aa28.28■■■□□ 2.12
UPF3A-201ENST00000351487 HDGFP51858 240 aaKnown RBP28.27■■■□□ 2.12
UPF3A-201ENST00000351487 ESF1Q9H501 851 aaKnown RBP28.27■■■□□ 2.12
UPF3A-201ENST00000351487 TNRQ92752 1358 aa28.27■■■□□ 2.12
UPF3A-201ENST00000351487 PRKAR2BP31323 418 aa28.26■■■□□ 2.11
UPF3A-201ENST00000351487 ATF7IPQ6VMQ6 1270 aa28.26■■■□□ 2.11
UPF3A-201ENST00000351487 USP19O94966 1318 aa28.25■■■□□ 2.11
UPF3A-201ENST00000351487 PDZRN3Q9UPQ7 1066 aa28.25■■■□□ 2.11
UPF3A-201ENST00000351487 KIF16BQ96L93 1317 aa28.24■■■□□ 2.11
UPF3A-201ENST00000351487 NEFMP07197 916 aa28.24■■■□□ 2.11
UPF3A-201ENST00000351487 DDX19BQ9UMR2 479 aa28.24■■■□□ 2.11
UPF3A-201ENST00000351487 TXNDC2Q86VQ3 553 aa28.23■■■□□ 2.11
UPF3A-201ENST00000351487 DAXXQ9UER7 740 aaPredicted RBP28.23■■■□□ 2.11
UPF3A-201ENST00000351487 ALDH1L2Q3SY69 923 aa28.23■■■□□ 2.11
UPF3A-201ENST00000351487 NUDT16Q96DE0 195 aaKnown RBP28.23■■■□□ 2.11
UPF3A-201ENST00000351487 TMEM2Q9UHN6 1383 aa28.23■■■□□ 2.11
UPF3A-201ENST00000351487 FBLN1P23142 703 aa28.22■■■□□ 2.11
UPF3A-201ENST00000351487 CCDC61Q9Y6R9 512 aa28.22■■■□□ 2.11
UPF3A-201ENST00000351487 NME9Q86XW9 330 aa28.22■■■□□ 2.11
UPF3A-201ENST00000351487 ZNF428Q96B54 188 aa28.21■■■□□ 2.11
UPF3A-201ENST00000351487 IL13P35225 146 aa28.2■■■□□ 2.11
UPF3A-201ENST00000351487 NFE2L2Q16236 605 aa28.2■■■□□ 2.11
UPF3A-201ENST00000351487 HDAC1Q13547 482 aaPredicted RBP28.2■■■□□ 2.1
UPF3A-201ENST00000351487 NOB1Q9ULX3 412 aaKnown RBP28.2■■■□□ 2.1
UPF3A-201ENST00000351487 EMILIN1Q9Y6C2 1016 aa28.2■■■□□ 2.1
UPF3A-201ENST00000351487 BRPF1P55201 1214 aaPredicted RBP28.19■■■□□ 2.1
UPF3A-201ENST00000351487 TOPAZ1Q8N9V7 1692 aa28.18■■■□□ 2.1
UPF3A-201ENST00000351487 SLC4A3P48751 1232 aa28.18■■■□□ 2.1
UPF3A-201ENST00000351487 NRKQ7Z2Y5 1582 aa28.18■■■□□ 2.1
UPF3A-201ENST00000351487 ADAMTS13Q76LX8 1427 aa28.18■■■□□ 2.1
UPF3A-201ENST00000351487 DLG5Q8TDM6 1919 aa28.18■■■□□ 2.1
UPF3A-201ENST00000351487 IPO8O15397 1037 aaKnown RBP28.18■■■□□ 2.1
UPF3A-201ENST00000351487 CALD1Q05682 793 aaKnown RBP28.17■■■□□ 2.1
UPF3A-201ENST00000351487 ITPRIPQ8IWB1 547 aa28.16■■■□□ 2.1
UPF3A-201ENST00000351487 BCL11AQ9H165 835 aa28.16■■■□□ 2.1
UPF3A-201ENST00000351487 COG3Q96JB2 828 aa28.16■■■□□ 2.1
UPF3A-201ENST00000351487 PHACTR3Q96KR7 559 aa28.16■■■□□ 2.1
UPF3A-201ENST00000351487 SEC24BO95487 1268 aa28.15■■■□□ 2.1
UPF3A-201ENST00000351487 HMOX1P09601 288 aa28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 135.5 ms