RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 CABP2Q9NPB3 220 aa13.91□□□□□ -0.18
SYNE1-202ENST00000347037 MYOM2P54296 1465 aa13.9□□□□□ -0.18
SYNE1-202ENST00000347037 TNPO1Q92973 898 aaKnown RBP13.9□□□□□ -0.18
SYNE1-202ENST00000347037 LMTK2Q8IWU2 1503 aa13.9□□□□□ -0.18
SYNE1-202ENST00000347037 TMPOP42166 694 aaKnown RBP13.89□□□□□ -0.19
SYNE1-202ENST00000347037 GGNBP2Q9H3C7 697 aa13.89□□□□□ -0.19
SYNE1-202ENST00000347037 SBNO2Q9Y2G9 1366 aa13.89□□□□□ -0.19
SYNE1-202ENST00000347037 GBP4Q96PP9 640 aa13.88□□□□□ -0.19
SYNE1-202ENST00000347037 IFT172Q9UG01 1749 aa13.88□□□□□ -0.19
SYNE1-202ENST00000347037 SMC5Q8IY18 1101 aa13.88□□□□□ -0.19
SYNE1-202ENST00000347037 ZNF692Q9BU19 519 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-202ENST00000347037 ESPNB1AK53 854 aa13.88□□□□□ -0.19
SYNE1-202ENST00000347037 RIPK4P57078 832 aa13.88□□□□□ -0.19
SYNE1-202ENST00000347037 NEURL4Q96JN8 1562 aa13.88□□□□□ -0.19
SYNE1-202ENST00000347037 GLIPR1L2Q4G1C9 344 aa13.87□□□□□ -0.19
SYNE1-202ENST00000347037 CT47B1P0C2W7 299 aaPredicted RBP13.87□□□□□ -0.19
SYNE1-202ENST00000347037 HSP90AA2PQ14568 343 aaPredicted RBP13.87□□□□□ -0.19
SYNE1-202ENST00000347037 ANKRD45Q5TZF3 282 aa13.87□□□□□ -0.19
SYNE1-202ENST00000347037 TSPOAP1O95153 1857 aa13.87□□□□□ -0.19
SYNE1-202ENST00000347037 EVC2Q86UK5 1308 aa13.87□□□□□ -0.19
SYNE1-202ENST00000347037 IPO8O15397 1037 aaKnown RBP13.86□□□□□ -0.19
SYNE1-202ENST00000347037 GGT6Q6P531 493 aa13.86□□□□□ -0.19
SYNE1-202ENST00000347037 C1orf115Q9H7X2 142 aa13.86□□□□□ -0.19
SYNE1-202ENST00000347037 TRIM35Q9UPQ4 493 aa13.86□□□□□ -0.19
SYNE1-202ENST00000347037 KIF1BO60333 1816 aa13.86□□□□□ -0.19
SYNE1-202ENST00000347037 CHD1LQ86WJ1 897 aa13.86□□□□□ -0.19
SYNE1-202ENST00000347037 C14orf93Q9H972 538 aaKnown RBP13.86□□□□□ -0.19
SYNE1-202ENST00000347037 ZBTB40Q9NUA8 1239 aa13.86□□□□□ -0.19
SYNE1-202ENST00000347037 GAS2L3Q86XJ1 694 aa13.86□□□□□ -0.19
SYNE1-202ENST00000347037 EFCAB6Q5THR3 1501 aa13.86□□□□□ -0.19
SYNE1-202ENST00000347037 SRPK2P78362 688 aaKnown RBP13.85□□□□□ -0.19
SYNE1-202ENST00000347037 NUCB1Q02818 461 aa13.85□□□□□ -0.19
SYNE1-202ENST00000347037 STK26Q9P289 416 aa13.85□□□□□ -0.19
SYNE1-202ENST00000347037 ERBB4Q15303 1308 aa13.85□□□□□ -0.19
SYNE1-202ENST00000347037 RBM25P49756 843 aaKnown RBP13.84□□□□□ -0.19
SYNE1-202ENST00000347037 KIF16BQ96L93 1317 aa13.84□□□□□ -0.19
SYNE1-202ENST00000347037 RBM42Q9BTD8 480 aaKnown RBP13.84□□□□□ -0.19
SYNE1-202ENST00000347037 MROH2AA6NES4 1674 aa13.84□□□□□ -0.19
SYNE1-202ENST00000347037 CFAP65Q6ZU64 1925 aaKnown RBP13.84□□□□□ -0.19
SYNE1-202ENST00000347037 REREQ9P2R6 1566 aa13.83□□□□□ -0.19
SYNE1-202ENST00000347037 CYB5RLQ6IPT4 315 aa13.83□□□□□ -0.19
SYNE1-202ENST00000347037 CD2BP2O95400 341 aaKnown RBP13.83□□□□□ -0.2
SYNE1-202ENST00000347037 SNX21Q969T3 373 aa13.83□□□□□ -0.2
SYNE1-202ENST00000347037 QRICH2Q9H0J4 1663 aa13.83□□□□□ -0.2
SYNE1-202ENST00000347037 VSIG10Q8N0Z9 540 aa13.83□□□□□ -0.2
SYNE1-202ENST00000347037 PLEKHF1Q96S99 279 aa13.83□□□□□ -0.2
SYNE1-202ENST00000347037 ANKRD36BQ8N2N9 1353 aa13.82□□□□□ -0.2
SYNE1-202ENST00000347037 RAB3GAP1Q15042 981 aa13.82□□□□□ -0.2
SYNE1-202ENST00000347037 ELL2O00472 640 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-202ENST00000347037 DDIT3P35638 169 aa13.81□□□□□ -0.2
SYNE1-202ENST00000347037 ISY1Q9ULR0 285 aaKnown RBP13.81□□□□□ -0.2
SYNE1-202ENST00000347037 MYO3AQ8NEV4 1616 aa13.81□□□□□ -0.2
SYNE1-202ENST00000347037 ZC3H13Q5T200 1668 aaKnown RBP13.81□□□□□ -0.2
SYNE1-202ENST00000347037 SSFA2P28290 1259 aa13.81□□□□□ -0.2
SYNE1-202ENST00000347037 SKOR2Q2VWA4 1001 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-202ENST00000347037 CIZ1Q9ULV3 898 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-202ENST00000347037 CAMSAP1Q5T5Y3 1602 aa13.81□□□□□ -0.2
SYNE1-202ENST00000347037 GOLGA6L22H0YM25 854 aa13.81□□□□□ -0.2
SYNE1-202ENST00000347037 NCLP19338 710 aaKnown RBP13.81□□□□□ -0.2
SYNE1-202ENST00000347037 PIK3C2BO00750 1634 aa13.81□□□□□ -0.2
SYNE1-202ENST00000347037 K7ELQ4 463 aaPredicted RBP13.8□□□□□ -0.2
SYNE1-202ENST00000347037 ABCC11Q96J66 1382 aa13.8□□□□□ -0.2
SYNE1-202ENST00000347037 NPM1P06748 294 aaKnown RBP eCLIP13.8□□□□□ -0.2
SYNE1-202ENST00000347037 BMP2KLQ5H9B9 411 aa13.8□□□□□ -0.2
SYNE1-202ENST00000347037 TBC1D9Q6ZT07 1266 aa13.8□□□□□ -0.2
SYNE1-202ENST00000347037 ANP32BQ92688 251 aaKnown RBP13.8□□□□□ -0.2
SYNE1-202ENST00000347037 NCOA3Q9Y6Q9 1424 aa13.8□□□□□ -0.2
SYNE1-202ENST00000347037 NRXN1Q9ULB1 1477 aa13.79□□□□□ -0.2
SYNE1-202ENST00000347037 DIAPH1O60610 1272 aaKnown RBP13.79□□□□□ -0.2
SYNE1-202ENST00000347037 DDX49Q9Y6V7 483 aaKnown RBP13.79□□□□□ -0.2
SYNE1-202ENST00000347037 NSD2O96028 1365 aa13.79□□□□□ -0.2
SYNE1-202ENST00000347037 NCBP3Q53F19 620 aaKnown RBP13.78□□□□□ -0.2
SYNE1-202ENST00000347037 GAS2L2Q8NHY3 880 aa13.78□□□□□ -0.2
SYNE1-202ENST00000347037 KIF2CQ99661 725 aa13.78□□□□□ -0.2
SYNE1-202ENST00000347037 A0A1W2PP64 1363 aa13.78□□□□□ -0.2
SYNE1-202ENST00000347037 NASPP49321 788 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-202ENST00000347037 THUMPD2Q9BTF0 503 aaKnown RBP13.78□□□□□ -0.2
SYNE1-202ENST00000347037 ABCC3O15438 1527 aa13.78□□□□□ -0.2
SYNE1-202ENST00000347037 MINK1Q8N4C8 1332 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-202ENST00000347037 RRP9O43818 475 aaKnown RBP13.78□□□□□ -0.2
SYNE1-202ENST00000347037 ADGRB2O60241 1585 aa13.77□□□□□ -0.21
SYNE1-202ENST00000347037 SETBP1Q9Y6X0 1596 aa13.77□□□□□ -0.21
SYNE1-202ENST00000347037 IL16Q14005 1332 aa13.77□□□□□ -0.21
SYNE1-202ENST00000347037 PTMSP20962 102 aa13.77□□□□□ -0.21
SYNE1-202ENST00000347037 FBLN1P23142 703 aa13.76□□□□□ -0.21
SYNE1-202ENST00000347037 YEATS2Q9ULM3 1422 aa13.76□□□□□ -0.21
SYNE1-202ENST00000347037 PRKAR2BP31323 418 aa13.76□□□□□ -0.21
SYNE1-202ENST00000347037 GCC1Q96CN9 775 aa13.76□□□□□ -0.21
SYNE1-202ENST00000347037 FYB1O15117 783 aa13.76□□□□□ -0.21
SYNE1-202ENST00000347037 ALDH1L2Q3SY69 923 aa13.76□□□□□ -0.21
SYNE1-202ENST00000347037 ADGRB3O60242 1522 aa13.75□□□□□ -0.21
SYNE1-202ENST00000347037 HMOX1P09601 288 aa13.75□□□□□ -0.21
SYNE1-202ENST00000347037 ADGRB1O14514 1584 aa13.75□□□□□ -0.21
SYNE1-202ENST00000347037 MCTP1Q6DN14 999 aa13.75□□□□□ -0.21
SYNE1-202ENST00000347037 PPIP5K1Q6PFW1 1433 aa13.75□□□□□ -0.21
SYNE1-202ENST00000347037 ZBTB7BO15156 539 aaPredicted RBP13.75□□□□□ -0.21
SYNE1-202ENST00000347037 VGFO15240 615 aaPredicted RBP13.75□□□□□ -0.21
SYNE1-202ENST00000347037 TERF2IPQ9NYB0 399 aa13.75□□□□□ -0.21
SYNE1-202ENST00000347037 TULP4Q9NRJ4 1543 aa13.74□□□□□ -0.21
SYNE1-202ENST00000347037 CCDC173Q0VFZ6 552 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms