RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 FBLN1P23142 703 aa19.98■□□□□ 0.79
UPF3B-202ENST00000345865 TMPOP42166 694 aaKnown RBP19.97■□□□□ 0.79
UPF3B-202ENST00000345865 CLUAP1Q96AJ1 413 aa19.97■□□□□ 0.79
UPF3B-202ENST00000345865 TRIM35Q9UPQ4 493 aa19.97■□□□□ 0.79
UPF3B-202ENST00000345865 PNPLA6Q8IY17 1366 aa19.96■□□□□ 0.79
UPF3B-202ENST00000345865 RGS3P49796 1198 aa19.96■□□□□ 0.79
UPF3B-202ENST00000345865 C8orf34Q49A92 452 aa19.96■□□□□ 0.79
UPF3B-202ENST00000345865 METP08581 1390 aa19.96■□□□□ 0.79
UPF3B-202ENST00000345865 ZMYM3Q14202 1370 aa19.95■□□□□ 0.78
UPF3B-202ENST00000345865 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.95■□□□□ 0.78
UPF3B-202ENST00000345865 TSR2Q969E8 191 aaKnown RBP19.95■□□□□ 0.78
UPF3B-202ENST00000345865 MYH16Q9H6N6 1097 aa19.95■□□□□ 0.78
UPF3B-202ENST00000345865 NBR1Q14596 966 aa19.93■□□□□ 0.78
UPF3B-202ENST00000345865 DIAPH1O60610 1272 aaKnown RBP19.93■□□□□ 0.78
UPF3B-202ENST00000345865 ATP7BP35670 1465 aa19.92■□□□□ 0.78
UPF3B-202ENST00000345865 FAM161AQ3B820 660 aa19.92■□□□□ 0.78
UPF3B-202ENST00000345865 TXNDC2Q86VQ3 553 aa19.91■□□□□ 0.78
UPF3B-202ENST00000345865 POLKQ9UBT6 870 aa19.91■□□□□ 0.78
UPF3B-202ENST00000345865 PCDHB15Q9Y5E8 787 aa19.9■□□□□ 0.78
UPF3B-202ENST00000345865 MAPK8IP3Q9UPT6 1336 aa19.9■□□□□ 0.78
UPF3B-202ENST00000345865 WASLO00401 505 aaPredicted RBP19.9■□□□□ 0.78
UPF3B-202ENST00000345865 EXOSC9Q06265 439 aaKnown RBP19.89■□□□□ 0.77
UPF3B-202ENST00000345865 NCKAP5LQ9HCH0 1330 aa19.89■□□□□ 0.77
UPF3B-202ENST00000345865 MAP2P11137 1827 aaKnown RBP19.89■□□□□ 0.77
UPF3B-202ENST00000345865 CPSF1Q10570 1443 aaKnown RBP19.89■□□□□ 0.77
UPF3B-202ENST00000345865 RIPK4P57078 832 aa19.88■□□□□ 0.77
UPF3B-202ENST00000345865 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.88■□□□□ 0.77
UPF3B-202ENST00000345865 PPM1GO15355 546 aaPredicted RBP19.87■□□□□ 0.77
UPF3B-202ENST00000345865 ESF1Q9H501 851 aaKnown RBP19.87■□□□□ 0.77
UPF3B-202ENST00000345865 PPIP5K1Q6PFW1 1433 aa19.87■□□□□ 0.77
UPF3B-202ENST00000345865 ZRANB1Q9UGI0 708 aa19.87■□□□□ 0.77
UPF3B-202ENST00000345865 CDC42BPGQ6DT37 1551 aa19.87■□□□□ 0.77
UPF3B-202ENST00000345865 LRRC7Q96NW7 1537 aa19.86■□□□□ 0.77
UPF3B-202ENST00000345865 NME9Q86XW9 330 aa19.86■□□□□ 0.77
UPF3B-202ENST00000345865 RSPH6AQ9H0K4 717 aa19.85■□□□□ 0.77
UPF3B-202ENST00000345865 FCHSD2O94868 740 aa19.84■□□□□ 0.77
UPF3B-202ENST00000345865 CT47B1P0C2W7 299 aaPredicted RBP19.84■□□□□ 0.77
UPF3B-202ENST00000345865 NUDT16Q96DE0 195 aaKnown RBP19.84■□□□□ 0.77
UPF3B-202ENST00000345865 EMILIN1Q9Y6C2 1016 aa19.84■□□□□ 0.77
UPF3B-202ENST00000345865 EDC4Q6P2E9 1401 aaKnown RBP19.84■□□□□ 0.77
UPF3B-202ENST00000345865 TNRQ92752 1358 aa19.84■□□□□ 0.77
UPF3B-202ENST00000345865 IL16Q14005 1332 aa19.84■□□□□ 0.77
UPF3B-202ENST00000345865 SSH1Q8WYL5 1049 aa19.84■□□□□ 0.77
UPF3B-202ENST00000345865 ZKSCAN2Q63HK3 967 aa19.83■□□□□ 0.76
UPF3B-202ENST00000345865 KNDC1Q76NI1 1749 aa19.83■□□□□ 0.76
UPF3B-202ENST00000345865 TECPR2O15040 1411 aa19.83■□□□□ 0.76
UPF3B-202ENST00000345865 PRKAR2BP31323 418 aa19.82■□□□□ 0.76
UPF3B-202ENST00000345865 MVPQ14764 893 aaKnown RBP19.82■□□□□ 0.76
UPF3B-202ENST00000345865 FAM135BQ49AJ0 1406 aa19.82■□□□□ 0.76
UPF3B-202ENST00000345865 UBR1Q8IWV7 1749 aa19.82■□□□□ 0.76
UPF3B-202ENST00000345865 CPS1P31327 1500 aa19.82■□□□□ 0.76
UPF3B-202ENST00000345865 AAMPQ13685 434 aa19.82■□□□□ 0.76
UPF3B-202ENST00000345865 SMC4Q9NTJ3 1288 aa19.82■□□□□ 0.76
UPF3B-202ENST00000345865 PHACTR3Q96KR7 559 aa19.81■□□□□ 0.76
UPF3B-202ENST00000345865 PMFBP1Q8TBY8 1022 aa19.81■□□□□ 0.76
UPF3B-202ENST00000345865 TMEM2Q9UHN6 1383 aa19.81■□□□□ 0.76
UPF3B-202ENST00000345865 HMOX1P09601 288 aa19.8■□□□□ 0.76
UPF3B-202ENST00000345865 TRIM27P14373 513 aa19.8■□□□□ 0.76
UPF3B-202ENST00000345865 DZIP1LQ8IYY4 767 aaKnown RBP19.8■□□□□ 0.76
UPF3B-202ENST00000345865 PNNQ9H307 717 aaKnown RBP19.8■□□□□ 0.76
UPF3B-202ENST00000345865 PRR36Q9H6K5 1346 aa19.8■□□□□ 0.76
UPF3B-202ENST00000345865 SIRT1Q96EB6 747 aa19.8■□□□□ 0.76
UPF3B-202ENST00000345865 DDRGK1Q96HY6 314 aa19.8■□□□□ 0.76
UPF3B-202ENST00000345865 LAS1LQ9Y4W2 734 aaKnown RBP19.8■□□□□ 0.76
UPF3B-202ENST00000345865 CCDC61Q9Y6R9 512 aa19.8■□□□□ 0.76
UPF3B-202ENST00000345865 VIRMAQ69YN4 1812 aaKnown RBP19.8■□□□□ 0.76
UPF3B-202ENST00000345865 MON2Q7Z3U7 1717 aa19.79■□□□□ 0.76
UPF3B-202ENST00000345865 ROBO2Q9HCK4 1378 aa19.79■□□□□ 0.76
UPF3B-202ENST00000345865 IL13P35225 146 aa19.79■□□□□ 0.76
UPF3B-202ENST00000345865 SLC4A3P48751 1232 aa19.78■□□□□ 0.76
UPF3B-202ENST00000345865 ADAMTS13Q76LX8 1427 aa19.78■□□□□ 0.76
UPF3B-202ENST00000345865 HDGFP51858 240 aaKnown RBP19.77■□□□□ 0.76
UPF3B-202ENST00000345865 FTSJ3Q8IY81 847 aaKnown RBP19.77■□□□□ 0.76
UPF3B-202ENST00000345865 NOB1Q9ULX3 412 aaKnown RBP19.77■□□□□ 0.76
UPF3B-202ENST00000345865 RRS1Q15050 365 aaKnown RBP19.76■□□□□ 0.75
UPF3B-202ENST00000345865 AKAP12Q02952 1782 aa19.76■□□□□ 0.75
UPF3B-202ENST00000345865 SEC24BO95487 1268 aa19.76■□□□□ 0.75
UPF3B-202ENST00000345865 LTKP29376 864 aa19.76■□□□□ 0.75
UPF3B-202ENST00000345865 PDZRN3Q9UPQ7 1066 aa19.76■□□□□ 0.75
UPF3B-202ENST00000345865 USP19O94966 1318 aa19.76■□□□□ 0.75
UPF3B-202ENST00000345865 AATKQ6ZMQ8 1374 aa19.76■□□□□ 0.75
UPF3B-202ENST00000345865 ATF7IPQ6VMQ6 1270 aa19.75■□□□□ 0.75
UPF3B-202ENST00000345865 THUMPD2Q9BTF0 503 aaKnown RBP19.75■□□□□ 0.75
UPF3B-202ENST00000345865 C3P01024 1663 aa19.75■□□□□ 0.75
UPF3B-202ENST00000345865 CDK12Q9NYV4 1490 aaPredicted RBP19.75■□□□□ 0.75
UPF3B-202ENST00000345865 NFE2L2Q16236 605 aa19.75■□□□□ 0.75
UPF3B-202ENST00000345865 DEKP35659 375 aaKnown RBP19.74■□□□□ 0.75
UPF3B-202ENST00000345865 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.74■□□□□ 0.75
UPF3B-202ENST00000345865 COG3Q96JB2 828 aa19.74■□□□□ 0.75
UPF3B-202ENST00000345865 RWDD1Q9H446 243 aaPredicted RBP19.74■□□□□ 0.75
UPF3B-202ENST00000345865 CEBPAP49715 358 aaPredicted RBP19.73■□□□□ 0.75
UPF3B-202ENST00000345865 ITSN1Q15811 1721 aa19.73■□□□□ 0.75
UPF3B-202ENST00000345865 ITPRIPQ8IWB1 547 aa19.71■□□□□ 0.75
UPF3B-202ENST00000345865 TMEM57Q8N5G2 664 aa19.71■□□□□ 0.75
UPF3B-202ENST00000345865 NEFMP07197 916 aa19.7■□□□□ 0.74
UPF3B-202ENST00000345865 ZNF692Q9BU19 519 aaPredicted RBP19.7■□□□□ 0.74
UPF3B-202ENST00000345865 DLG5Q8TDM6 1919 aa19.7■□□□□ 0.74
UPF3B-202ENST00000345865 NUTM2FA1L443 756 aa19.69■□□□□ 0.74
UPF3B-202ENST00000345865 DDX19BQ9UMR2 479 aa19.69■□□□□ 0.74
UPF3B-202ENST00000345865 PLEKHG1Q9ULL1 1385 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms