RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 MYH16Q9H6N6 1097 aa28.29■■■□□ 2.12
TRIM28-202ENST00000341753 ZC3H13Q5T200 1668 aaKnown RBP28.29■■■□□ 2.12
TRIM28-202ENST00000341753 CHMP5Q9NZZ3 219 aa28.28■■■□□ 2.12
TRIM28-202ENST00000341753 SMC4Q9NTJ3 1288 aa28.28■■■□□ 2.12
TRIM28-202ENST00000341753 EVC2Q86UK5 1308 aa28.27■■■□□ 2.12
TRIM28-202ENST00000341753 ITPRIPQ8IWB1 547 aa28.27■■■□□ 2.12
TRIM28-202ENST00000341753 CFAP53Q96M91 514 aa28.27■■■□□ 2.12
TRIM28-202ENST00000341753 PIK3C2BO00750 1634 aa28.26■■■□□ 2.12
TRIM28-202ENST00000341753 TULP4Q9NRJ4 1543 aa28.26■■■□□ 2.11
TRIM28-202ENST00000341753 MINK1Q8N4C8 1332 aaPredicted RBP28.26■■■□□ 2.11
TRIM28-202ENST00000341753 ZMYM3Q14202 1370 aa28.25■■■□□ 2.11
TRIM28-202ENST00000341753 SRPK2P78362 688 aaKnown RBP28.25■■■□□ 2.11
TRIM28-202ENST00000341753 NAP1L5Q96NT1 182 aaPredicted RBP28.25■■■□□ 2.11
TRIM28-202ENST00000341753 EXOSC9Q06265 439 aaKnown RBP28.24■■■□□ 2.11
TRIM28-202ENST00000341753 MLECQ14165 292 aa28.24■■■□□ 2.11
TRIM28-202ENST00000341753 MYO5BQ9ULV0 1848 aa28.24■■■□□ 2.11
TRIM28-202ENST00000341753 TRIM27P14373 513 aa28.24■■■□□ 2.11
TRIM28-202ENST00000341753 CCDC27Q2M243 656 aa28.22■■■□□ 2.11
TRIM28-202ENST00000341753 SLC52A1Q9NWF4 448 aa28.22■■■□□ 2.11
TRIM28-202ENST00000341753 HSCBQ8IWL3 235 aa28.21■■■□□ 2.11
TRIM28-202ENST00000341753 ARHGEF28Q8N1W1 1705 aaKnown RBP28.21■■■□□ 2.11
TRIM28-202ENST00000341753 SSH1Q8WYL5 1049 aa28.2■■■□□ 2.11
TRIM28-202ENST00000341753 PRAM1Q96QH2 718 aa28.2■■■□□ 2.11
TRIM28-202ENST00000341753 ARHGAP31Q2M1Z3 1444 aa28.2■■■□□ 2.1
TRIM28-202ENST00000341753 PNNQ9H307 717 aaKnown RBP28.2■■■□□ 2.1
TRIM28-202ENST00000341753 U2SURPO15042 1029 aaKnown RBP28.19■■■□□ 2.1
TRIM28-202ENST00000341753 STAG3Q9UJ98 1225 aa28.19■■■□□ 2.1
TRIM28-202ENST00000341753 TSPOAP1O95153 1857 aa28.19■■■□□ 2.1
TRIM28-202ENST00000341753 GGNBP2Q9H3C7 697 aa28.19■■■□□ 2.1
TRIM28-202ENST00000341753 NOB1Q9ULX3 412 aaKnown RBP28.17■■■□□ 2.1
TRIM28-202ENST00000341753 ZNF692Q9BU19 519 aaPredicted RBP28.16■■■□□ 2.1
TRIM28-202ENST00000341753 ANKRD36BQ8N2N9 1353 aa28.15■■■□□ 2.1
TRIM28-202ENST00000341753 TMEM57Q8N5G2 664 aa28.15■■■□□ 2.1
TRIM28-202ENST00000341753 HDAC1Q13547 482 aaPredicted RBP28.14■■■□□ 2.1
TRIM28-202ENST00000341753 A0A1W2PP64 1363 aa28.14■■■□□ 2.1
TRIM28-202ENST00000341753 LNPKQ9C0E8 428 aa28.14■■■□□ 2.1
TRIM28-202ENST00000341753 FOXD4L1Q9NU39 408 aa28.13■■■□□ 2.09
TRIM28-202ENST00000341753 MRE11P49959 708 aa28.13■■■□□ 2.09
TRIM28-202ENST00000341753 ATF7IPQ6VMQ6 1270 aa28.13■■■□□ 2.09
TRIM28-202ENST00000341753 GRPEL1Q9HAV7 217 aa28.13■■■□□ 2.09
TRIM28-202ENST00000341753 DDX19BQ9UMR2 479 aa28.13■■■□□ 2.09
TRIM28-202ENST00000341753 PREX1Q8TCU6 1659 aa28.13■■■□□ 2.09
TRIM28-202ENST00000341753 CLCN1P35523 988 aa28.12■■■□□ 2.09
TRIM28-202ENST00000341753 TMEM131LA2VDJ0 1609 aa28.11■■■□□ 2.09
TRIM28-202ENST00000341753 SMC5Q8IY18 1101 aa28.1■■■□□ 2.09
TRIM28-202ENST00000341753 DDX11L8A8MPP1 907 aa28.09■■■□□ 2.09
TRIM28-202ENST00000341753 TRIM35Q9UPQ4 493 aa28.09■■■□□ 2.09
TRIM28-202ENST00000341753 TMPOP42166 694 aaKnown RBP28.09■■■□□ 2.09
TRIM28-202ENST00000341753 TNPO1Q92973 898 aaKnown RBP28.08■■■□□ 2.09
TRIM28-202ENST00000341753 WAPLQ7Z5K2 1190 aa28.07■■■□□ 2.08
TRIM28-202ENST00000341753 YTHDC2Q9H6S0 1430 aaKnown RBP28.07■■■□□ 2.08
TRIM28-202ENST00000341753 HSP90AB1P08238 724 aaKnown RBP28.06■■■□□ 2.08
TRIM28-202ENST00000341753 FBLN1P23142 703 aa28.06■■■□□ 2.08
TRIM28-202ENST00000341753 ERBB4Q15303 1308 aa28.06■■■□□ 2.08
TRIM28-202ENST00000341753 PTPRMP28827 1452 aa28.06■■■□□ 2.08
TRIM28-202ENST00000341753 GAS2L3Q86XJ1 694 aa28.05■■■□□ 2.08
TRIM28-202ENST00000341753 ZBTB40Q9NUA8 1239 aa28.05■■■□□ 2.08
TRIM28-202ENST00000341753 RIMBP3CA6NJZ7 1639 aa28.04■■■□□ 2.08
TRIM28-202ENST00000341753 RIMBP3BA6NNM3 1639 aa28.04■■■□□ 2.08
TRIM28-202ENST00000341753 RIMBP3Q9UFD9 1639 aa28.04■■■□□ 2.08
TRIM28-202ENST00000341753 PLEKHF1Q96S99 279 aa28.04■■■□□ 2.08
TRIM28-202ENST00000341753 ZFYVE9O95405 1425 aa28.04■■■□□ 2.08
TRIM28-202ENST00000341753 DDIT3P35638 169 aa28.04■■■□□ 2.08
TRIM28-202ENST00000341753 CDK19Q9BWU1 502 aa28.04■■■□□ 2.08
TRIM28-202ENST00000341753 CABP1Q9NZU7 370 aa28.03■■■□□ 2.08
TRIM28-202ENST00000341753 FYB1O15117 783 aa28.03■■■□□ 2.08
TRIM28-202ENST00000341753 CD2BP2O95400 341 aaKnown RBP28.02■■■□□ 2.08
TRIM28-202ENST00000341753 CT47B1P0C2W7 299 aaPredicted RBP28.02■■■□□ 2.08
TRIM28-202ENST00000341753 RBM25P49756 843 aaKnown RBP28.02■■■□□ 2.08
TRIM28-202ENST00000341753 NUCB1Q02818 461 aa28.02■■■□□ 2.08
TRIM28-202ENST00000341753 RIPK4P57078 832 aa28.01■■■□□ 2.07
TRIM28-202ENST00000341753 DIP2BQ9P265 1576 aa28.01■■■□□ 2.07
TRIM28-202ENST00000341753 PUS7Q96PZ0 661 aaKnown RBP28.01■■■□□ 2.07
TRIM28-202ENST00000341753 ESPNB1AK53 854 aa28■■■□□ 2.07
TRIM28-202ENST00000341753 HSP90AA1P07900 732 aaKnown RBP28■■■□□ 2.07
TRIM28-202ENST00000341753 C1orf115Q9H7X2 142 aa28■■■□□ 2.07
TRIM28-202ENST00000341753 NCOA3Q9Y6Q9 1424 aa28■■■□□ 2.07
TRIM28-202ENST00000341753 USP32Q8NFA0 1604 aa28■■■□□ 2.07
TRIM28-202ENST00000341753 CHD1LQ86WJ1 897 aa27.99■■■□□ 2.07
TRIM28-202ENST00000341753 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.99■■■□□ 2.07
TRIM28-202ENST00000341753 ADGRB2O60241 1585 aa27.99■■■□□ 2.07
TRIM28-202ENST00000341753 RBM42Q9BTD8 480 aaKnown RBP27.99■■■□□ 2.07
TRIM28-202ENST00000341753 ABCC11Q96J66 1382 aa27.99■■■□□ 2.07
TRIM28-202ENST00000341753 ALKQ9UM73 1620 aa27.97■■■□□ 2.07
TRIM28-202ENST00000341753 ANKRD45Q5TZF3 282 aa27.97■■■□□ 2.07
TRIM28-202ENST00000341753 SNX21Q969T3 373 aa27.97■■■□□ 2.07
TRIM28-202ENST00000341753 KIF2CQ99661 725 aa27.96■■■□□ 2.07
TRIM28-202ENST00000341753 TERF2IPQ9NYB0 399 aa27.96■■■□□ 2.07
TRIM28-202ENST00000341753 CD163L1Q9NR16 1453 aa27.96■■■□□ 2.07
TRIM28-202ENST00000341753 TRIM44Q96DX7 344 aaPredicted RBP27.95■■■□□ 2.07
TRIM28-202ENST00000341753 NSD2O96028 1365 aa27.95■■■□□ 2.06
TRIM28-202ENST00000341753 CLTCQ00610 1675 aaKnown RBP27.94■■■□□ 2.06
TRIM28-202ENST00000341753 GBP4Q96PP9 640 aa27.94■■■□□ 2.06
TRIM28-202ENST00000341753 RAB3GAP1Q15042 981 aa27.94■■■□□ 2.06
TRIM28-202ENST00000341753 NCBP3Q53F19 620 aaKnown RBP27.93■■■□□ 2.06
TRIM28-202ENST00000341753 ATAD2Q6PL18 1390 aa27.93■■■□□ 2.06
TRIM28-202ENST00000341753 IPO8O15397 1037 aaKnown RBP27.92■■■□□ 2.06
TRIM28-202ENST00000341753 KIF16BQ96L93 1317 aa27.92■■■□□ 2.06
TRIM28-202ENST00000341753 SSFA2P28290 1259 aa27.91■■■□□ 2.06
TRIM28-202ENST00000341753 HSP90AA2PQ14568 343 aaPredicted RBP27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms