RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 VIRMAQ69YN4 1812 aaKnown RBP10.23□□□□□ -0.77
HPS4-201ENST00000336873 SCAF11Q99590 1463 aaKnown RBP10.22□□□□□ -0.77
HPS4-201ENST00000336873 SLC4A2P04920 1241 aa10.22□□□□□ -0.77
HPS4-201ENST00000336873 CHMP3Q9Y3E7 222 aa10.22□□□□□ -0.77
HPS4-201ENST00000336873 AEBP1Q8IUX7 1158 aa10.22□□□□□ -0.77
HPS4-201ENST00000336873 C16orf71Q8IYS4 520 aaPredicted RBP10.22□□□□□ -0.77
HPS4-201ENST00000336873 LARP6Q9BRS8 491 aaKnown RBP10.22□□□□□ -0.77
HPS4-201ENST00000336873 STK31Q9BXU1 1019 aa10.22□□□□□ -0.77
HPS4-201ENST00000336873 MYO5CQ9NQX4 1742 aa10.22□□□□□ -0.77
HPS4-201ENST00000336873 PLA2R1Q13018 1463 aa10.22□□□□□ -0.77
HPS4-201ENST00000336873 BCL11BQ9C0K0 894 aaPredicted RBP10.22□□□□□ -0.77
HPS4-201ENST00000336873 C14orf93Q9H972 538 aaKnown RBP10.22□□□□□ -0.77
HPS4-201ENST00000336873 TRAK2O60296 914 aa10.21□□□□□ -0.77
HPS4-201ENST00000336873 DNTTIP2Q5QJE6 756 aaKnown RBP10.21□□□□□ -0.77
HPS4-201ENST00000336873 TSPYL4Q9UJ04 414 aa10.21□□□□□ -0.77
HPS4-201ENST00000336873 WDR63Q8IWG1 891 aa10.21□□□□□ -0.77
HPS4-201ENST00000336873 USHBP1Q8N6Y0 703 aa10.21□□□□□ -0.77
HPS4-201ENST00000336873 UGGT1Q9NYU2 1555 aa10.21□□□□□ -0.78
HPS4-201ENST00000336873 NLRP6P59044 892 aa10.21□□□□□ -0.78
HPS4-201ENST00000336873 EXOC6BQ9Y2D4 811 aa10.21□□□□□ -0.78
HPS4-201ENST00000336873 ERCC6L2Q5T890 1561 aa10.21□□□□□ -0.78
HPS4-201ENST00000336873 CHD1O14646 1710 aa10.21□□□□□ -0.78
HPS4-201ENST00000336873 MCTP1Q6DN14 999 aa10.2□□□□□ -0.78
HPS4-201ENST00000336873 RNF214Q8ND24 703 aa10.2□□□□□ -0.78
HPS4-201ENST00000336873 DDX54Q8TDD1 881 aaKnown RBP10.2□□□□□ -0.78
HPS4-201ENST00000336873 PANK2Q9BZ23 570 aa10.2□□□□□ -0.78
HPS4-201ENST00000336873 ADCY10Q96PN6 1610 aa10.2□□□□□ -0.78
HPS4-201ENST00000336873 ABCC10Q5T3U5 1492 aa10.2□□□□□ -0.78
HPS4-201ENST00000336873 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.2□□□□□ -0.78
HPS4-201ENST00000336873 ANO2Q9NQ90 1003 aa10.2□□□□□ -0.78
HPS4-201ENST00000336873 UHRF1BP1Q6BDS2 1440 aa10.2□□□□□ -0.78
HPS4-201ENST00000336873 CHD1LQ86WJ1 897 aa10.2□□□□□ -0.78
HPS4-201ENST00000336873 IL1RAPL2Q9NP60 686 aa10.19□□□□□ -0.78
HPS4-201ENST00000336873 CHMP5Q9NZZ3 219 aa10.19□□□□□ -0.78
HPS4-201ENST00000336873 KDM2BQ8NHM5 1336 aa10.19□□□□□ -0.78
HPS4-201ENST00000336873 GBP4Q96PP9 640 aa10.19□□□□□ -0.78
HPS4-201ENST00000336873 COL17A1Q9UMD9 1497 aaPredicted RBP10.19□□□□□ -0.78
HPS4-201ENST00000336873 KIF16BQ96L93 1317 aa10.19□□□□□ -0.78
HPS4-201ENST00000336873 AIMP1Q12904 312 aaKnown RBP10.19□□□□□ -0.78
HPS4-201ENST00000336873 SHANK2Q9UPX8 1470 aa10.18□□□□□ -0.78
HPS4-201ENST00000336873 GNAI1P63096 354 aa10.18□□□□□ -0.78
HPS4-201ENST00000336873 L1TD1Q5T7N2 865 aaKnown RBP10.18□□□□□ -0.78
HPS4-201ENST00000336873 ANXA1P04083 346 aa10.18□□□□□ -0.78
HPS4-201ENST00000336873 C8orf58Q8NAV2 365 aa10.18□□□□□ -0.78
HPS4-201ENST00000336873 FOXO3O43524 673 aa10.18□□□□□ -0.78
HPS4-201ENST00000336873 HSP90AB2PQ58FF8 381 aa10.18□□□□□ -0.78
HPS4-201ENST00000336873 NUDT16Q96DE0 195 aaKnown RBP10.18□□□□□ -0.78
HPS4-201ENST00000336873 CALD1Q05682 793 aaKnown RBP10.17□□□□□ -0.78
HPS4-201ENST00000336873 EID1Q9Y6B2 187 aa10.17□□□□□ -0.78
HPS4-201ENST00000336873 ADGRL2O95490 1459 aa10.17□□□□□ -0.78
HPS4-201ENST00000336873 MBIPQ9NS73 344 aa10.16□□□□□ -0.78
HPS4-201ENST00000336873 MCM4P33991 863 aa10.16□□□□□ -0.78
HPS4-201ENST00000336873 HAP1P54257 671 aaPredicted RBP10.16□□□□□ -0.78
HPS4-201ENST00000336873 SLC52A1Q9NWF4 448 aa10.16□□□□□ -0.78
HPS4-201ENST00000336873 DUOX2Q9NRD8 1548 aa10.16□□□□□ -0.78
HPS4-201ENST00000336873 UPF3BQ9BZI7 483 aaKnown RBP10.16□□□□□ -0.78
HPS4-201ENST00000336873 MYOM1P52179 1685 aa10.16□□□□□ -0.78
HPS4-201ENST00000336873 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.15□□□□□ -0.78
HPS4-201ENST00000336873 NEK4P51957 841 aa10.15□□□□□ -0.78
HPS4-201ENST00000336873 FGD1P98174 961 aa10.15□□□□□ -0.78
HPS4-201ENST00000336873 CAVIN1Q6NZI2 390 aaKnown RBP10.15□□□□□ -0.78
HPS4-201ENST00000336873 OTUD7AQ8TE49 926 aaPredicted RBP10.15□□□□□ -0.78
HPS4-201ENST00000336873 POLKQ9UBT6 870 aa10.15□□□□□ -0.78
HPS4-201ENST00000336873 ASXL1Q8IXJ9 1541 aa10.15□□□□□ -0.78
HPS4-201ENST00000336873 CHAMP1Q96JM3 812 aa10.15□□□□□ -0.78
HPS4-201ENST00000336873 ARHGEF12Q9NZN5 1544 aa10.15□□□□□ -0.78
HPS4-201ENST00000336873 CHMP4BQ9H444 224 aaKnown RBP10.15□□□□□ -0.79
HPS4-201ENST00000336873 ABTB2Q8N961 1025 aa10.14□□□□□ -0.79
HPS4-201ENST00000336873 TRIM35Q9UPQ4 493 aa10.14□□□□□ -0.79
HPS4-201ENST00000336873 NLRP1Q9C000 1473 aa10.14□□□□□ -0.79
HPS4-201ENST00000336873 CSB-PGBD3P0DP91 1061 aa10.14□□□□□ -0.79
HPS4-201ENST00000336873 NFE2L2Q16236 605 aa10.14□□□□□ -0.79
HPS4-201ENST00000336873 PRPF40AO75400 957 aaKnown RBP10.14□□□□□ -0.79
HPS4-201ENST00000336873 FCHSD2O94868 740 aa10.14□□□□□ -0.79
HPS4-201ENST00000336873 FOSBP53539 338 aa10.14□□□□□ -0.79
HPS4-201ENST00000336873 TBC1D32Q96NH3 1257 aa10.14□□□□□ -0.79
HPS4-201ENST00000336873 BLMP54132 1417 aaPredicted RBP10.14□□□□□ -0.79
HPS4-201ENST00000336873 A0A1W2PP64 1363 aa10.13□□□□□ -0.79
HPS4-201ENST00000336873 RTEL1-TNFRSF6BF6WH68 1400 aa10.13□□□□□ -0.79
HPS4-201ENST00000336873 API5Q9BZZ5 524 aaKnown RBP10.13□□□□□ -0.79
HPS4-201ENST00000336873 CCDC61Q9Y6R9 512 aa10.13□□□□□ -0.79
HPS4-201ENST00000336873 SSFA2P28290 1259 aa10.13□□□□□ -0.79
HPS4-201ENST00000336873 LMOD3Q0VAK6 560 aa10.13□□□□□ -0.79
HPS4-201ENST00000336873 CCDC27Q2M243 656 aa10.13□□□□□ -0.79
HPS4-201ENST00000336873 UHRF1BP1LA0JNW5 1464 aa10.13□□□□□ -0.79
HPS4-201ENST00000336873 MSNP26038 577 aaKnown RBP10.13□□□□□ -0.79
HPS4-201ENST00000336873 MEIS3Q99687 375 aa10.13□□□□□ -0.79
HPS4-201ENST00000336873 GDPD2Q9HCC8 539 aa10.13□□□□□ -0.79
HPS4-201ENST00000336873 ZNF518AQ6AHZ1 1483 aa10.12□□□□□ -0.79
HPS4-201ENST00000336873 HMMRO75330 724 aa10.12□□□□□ -0.79
HPS4-201ENST00000336873 SURF6O75683 361 aaKnown RBP10.12□□□□□ -0.79
HPS4-201ENST00000336873 TBC1D9Q6ZT07 1266 aa10.12□□□□□ -0.79
HPS4-201ENST00000336873 USP19O94966 1318 aa10.12□□□□□ -0.79
HPS4-201ENST00000336873 ST18O60284 1047 aa10.12□□□□□ -0.79
HPS4-201ENST00000336873 KIAA1211Q6ZU35 1233 aa10.12□□□□□ -0.79
HPS4-201ENST00000336873 NUTM1Q86Y26 1132 aa10.12□□□□□ -0.79
HPS4-201ENST00000336873 SAMD9LQ8IVG5 1584 aa10.11□□□□□ -0.79
HPS4-201ENST00000336873 CDC42BPBQ9Y5S2 1711 aa10.11□□□□□ -0.79
HPS4-201ENST00000336873 PPFIA3O75145 1194 aa10.11□□□□□ -0.79
HPS4-201ENST00000336873 TEFQ10587 303 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms