RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 GORABQ5T7V8 394 aa8.54□□□□□ -1.04
SF3B1-201ENST00000335508 HDGFL1Q5TGJ6 251 aa8.54□□□□□ -1.04
SF3B1-201ENST00000335508 BCL2L13Q9BXK5 485 aa8.54□□□□□ -1.04
SF3B1-201ENST00000335508 IL16Q14005 1332 aa8.54□□□□□ -1.04
SF3B1-201ENST00000335508 ZC3H6P61129 1189 aaKnown RBP8.54□□□□□ -1.04
SF3B1-201ENST00000335508 ZFYVE16Q7Z3T8 1539 aa8.54□□□□□ -1.04
SF3B1-201ENST00000335508 ZFYVE9O95405 1425 aa8.53□□□□□ -1.04
SF3B1-201ENST00000335508 SPATA31E1Q6ZUB1 1445 aa8.53□□□□□ -1.04
SF3B1-201ENST00000335508 KRT28Q7Z3Y7 464 aa8.53□□□□□ -1.04
SF3B1-201ENST00000335508 ABCC1P33527 1531 aa8.53□□□□□ -1.04
SF3B1-201ENST00000335508 EXOSC9Q06265 439 aaKnown RBP8.53□□□□□ -1.04
SF3B1-201ENST00000335508 TRPM2O94759 1503 aa8.53□□□□□ -1.04
SF3B1-201ENST00000335508 PARD3Q8TEW0 1356 aa8.53□□□□□ -1.04
SF3B1-201ENST00000335508 EIF2S2P20042 333 aaKnown RBP8.52□□□□□ -1.05
SF3B1-201ENST00000335508 EMILIN1Q9Y6C2 1016 aa8.52□□□□□ -1.05
SF3B1-201ENST00000335508 NCLP19338 710 aaKnown RBP8.52□□□□□ -1.05
SF3B1-201ENST00000335508 CCDC27Q2M243 656 aa8.52□□□□□ -1.05
SF3B1-201ENST00000335508 ATF7IPQ6VMQ6 1270 aa8.52□□□□□ -1.05
SF3B1-201ENST00000335508 NLRP1Q9C000 1473 aa8.51□□□□□ -1.05
SF3B1-201ENST00000335508 CLASP1Q7Z460 1538 aa8.51□□□□□ -1.05
SF3B1-201ENST00000335508 FLT4P35916 1363 aa8.51□□□□□ -1.05
SF3B1-201ENST00000335508 DISP3Q9P2K9 1392 aa8.51□□□□□ -1.05
SF3B1-201ENST00000335508 RRS1Q15050 365 aaKnown RBP8.51□□□□□ -1.05
SF3B1-201ENST00000335508 INSRP06213 1382 aa8.51□□□□□ -1.05
SF3B1-201ENST00000335508 CCT4P50991 539 aaKnown RBP8.51□□□□□ -1.05
SF3B1-201ENST00000335508 SLFN5Q08AF3 891 aa8.51□□□□□ -1.05
SF3B1-201ENST00000335508 PIK3C2GO75747 1445 aa8.51□□□□□ -1.05
SF3B1-201ENST00000335508 LRRC59Q96AG4 307 aaKnown RBP8.5□□□□□ -1.05
SF3B1-201ENST00000335508 RPAP2Q8IXW5 612 aaPredicted RBP8.5□□□□□ -1.05
SF3B1-201ENST00000335508 SRCIN1Q9C0H9 1055 aa8.5□□□□□ -1.05
SF3B1-201ENST00000335508 IFT57Q9NWB7 429 aa8.5□□□□□ -1.05
SF3B1-201ENST00000335508 REC8O95072 547 aa8.5□□□□□ -1.05
SF3B1-201ENST00000335508 ALDH1L2Q3SY69 923 aa8.5□□□□□ -1.05
SF3B1-201ENST00000335508 CDCA7LQ96GN5 454 aa8.5□□□□□ -1.05
SF3B1-201ENST00000335508 UBTFL1P0CB47 393 aaPredicted RBP8.49□□□□□ -1.05
SF3B1-201ENST00000335508 KIF3AQ9Y496 699 aa8.49□□□□□ -1.05
SF3B1-201ENST00000335508 GNAT3A8MTJ3 354 aa8.49□□□□□ -1.05
SF3B1-201ENST00000335508 HTATSF1O43719 755 aaKnown RBP8.49□□□□□ -1.05
SF3B1-201ENST00000335508 TAF7Q15545 349 aaPredicted RBP8.49□□□□□ -1.05
SF3B1-201ENST00000335508 CLASRPQ8N2M8 674 aaKnown RBP8.49□□□□□ -1.05
SF3B1-201ENST00000335508 EXOC6Q8TAG9 804 aa8.49□□□□□ -1.05
SF3B1-201ENST00000335508 SYTL4Q96C24 671 aaPredicted RBP8.49□□□□□ -1.05
SF3B1-201ENST00000335508 LTKP29376 864 aa8.49□□□□□ -1.05
SF3B1-201ENST00000335508 HSPA2P54652 639 aa8.49□□□□□ -1.05
SF3B1-201ENST00000335508 G3BP1Q13283 466 aaKnown RBP eCLIP8.49□□□□□ -1.058e-7■□□□□ 9.7
SF3B1-201ENST00000335508 RUFY2Q8WXA3 655 aa8.49□□□□□ -1.05
SF3B1-201ENST00000335508 TEX13AQ9BXU3 409 aaPredicted RBP8.49□□□□□ -1.05
SF3B1-201ENST00000335508 STRN4Q9NRL3 753 aa8.49□□□□□ -1.05
SF3B1-201ENST00000335508 USP35Q9P2H5 1018 aa8.49□□□□□ -1.05
SF3B1-201ENST00000335508 POLKQ9UBT6 870 aa8.49□□□□□ -1.05
SF3B1-201ENST00000335508 KDM5DQ9BY66 1539 aa8.49□□□□□ -1.05
SF3B1-201ENST00000335508 EIF2AK4Q9P2K8 1649 aaKnown RBP8.49□□□□□ -1.05
SF3B1-201ENST00000335508 SOS1Q07889 1333 aaPredicted RBP8.49□□□□□ -1.05
SF3B1-201ENST00000335508 MEX3CQ5U5Q3 659 aaKnown RBP8.48□□□□□ -1.05
SF3B1-201ENST00000335508 HSCBQ8IWL3 235 aa8.48□□□□□ -1.05
SF3B1-201ENST00000335508 IFNL2Q8IZJ0 200 aa8.48□□□□□ -1.05
SF3B1-201ENST00000335508 CHMP3Q9Y3E7 222 aa8.48□□□□□ -1.05
SF3B1-201ENST00000335508 GCP02774 474 aa8.48□□□□□ -1.05
SF3B1-201ENST00000335508 APBB1O00213 710 aa8.48□□□□□ -1.05
SF3B1-201ENST00000335508 COL17A1Q9UMD9 1497 aaPredicted RBP8.48□□□□□ -1.05
SF3B1-201ENST00000335508 RIC3Q7Z5B4 369 aa8.48□□□□□ -1.05
SF3B1-201ENST00000335508 PLEKHG1Q9ULL1 1385 aa8.48□□□□□ -1.05
SF3B1-201ENST00000335508 MAST1Q9Y2H9 1570 aa8.48□□□□□ -1.05
SF3B1-201ENST00000335508 CABP4P57796 275 aa8.47□□□□□ -1.05
SF3B1-201ENST00000335508 CFAP74Q9C0B2 1584 aa8.47□□□□□ -1.05
SF3B1-201ENST00000335508 CCDC184Q52MB2 194 aa8.47□□□□□ -1.05
SF3B1-201ENST00000335508 ARHGAP45Q92619 1136 aa8.47□□□□□ -1.05
SF3B1-201ENST00000335508 GCC1Q96CN9 775 aa8.47□□□□□ -1.05
SF3B1-201ENST00000335508 ERC2O15083 957 aa8.47□□□□□ -1.05
SF3B1-201ENST00000335508 SLC4A2P04920 1241 aa8.47□□□□□ -1.05
SF3B1-201ENST00000335508 CRBNQ96SW2 442 aa8.47□□□□□ -1.05
SF3B1-201ENST00000335508 BABAM1Q9NWV8 329 aa8.47□□□□□ -1.05
SF3B1-201ENST00000335508 PLA2R1Q13018 1463 aa8.47□□□□□ -1.05
SF3B1-201ENST00000335508 FAM161AQ3B820 660 aa8.46□□□□□ -1.05
SF3B1-201ENST00000335508 DBF4Q9UBU7 674 aaPredicted RBP8.46□□□□□ -1.05
SF3B1-201ENST00000335508 GLIPR1L2Q4G1C9 344 aa8.46□□□□□ -1.05
SF3B1-201ENST00000335508 SAMD9LQ8IVG5 1584 aa8.46□□□□□ -1.05
SF3B1-201ENST00000335508 ERCC6L2Q5T890 1561 aa8.46□□□□□ -1.05
SF3B1-201ENST00000335508 HSP90AB2PQ58FF8 381 aa8.46□□□□□ -1.05
SF3B1-201ENST00000335508 EXOC5O00471 708 aa8.46□□□□□ -1.06
SF3B1-201ENST00000335508 XPCQ01831 940 aaPredicted RBP8.46□□□□□ -1.06
SF3B1-201ENST00000335508 CDCA7Q9BWT1 371 aaPredicted RBP8.46□□□□□ -1.06
SF3B1-201ENST00000335508 MYOM2P54296 1465 aa8.46□□□□□ -1.06
SF3B1-201ENST00000335508 UBAP1LF5GYI3 381 aa8.46□□□□□ -1.06
SF3B1-201ENST00000335508 STARD3NLO95772 234 aa8.46□□□□□ -1.06
SF3B1-201ENST00000335508 ANKRD45Q5TZF3 282 aa8.46□□□□□ -1.06
SF3B1-201ENST00000335508 CARD14Q9BXL6 1004 aa8.46□□□□□ -1.06
SF3B1-201ENST00000335508 EDC4Q6P2E9 1401 aaKnown RBP8.46□□□□□ -1.06
SF3B1-201ENST00000335508 NGLY1Q96IV0 654 aa8.46□□□□□ -1.06
SF3B1-201ENST00000335508 PLIN1O60240 522 aa8.45□□□□□ -1.06
SF3B1-201ENST00000335508 MAP3K19Q56UN5 1328 aa8.45□□□□□ -1.06
SF3B1-201ENST00000335508 PPIP5K1Q6PFW1 1433 aa8.45□□□□□ -1.06
SF3B1-201ENST00000335508 ERC1Q8IUD2 1116 aa8.45□□□□□ -1.06
SF3B1-201ENST00000335508 FAM135BQ49AJ0 1406 aa8.45□□□□□ -1.06
SF3B1-201ENST00000335508 ZKSCAN1P17029 563 aaPredicted RBP8.45□□□□□ -1.06
SF3B1-201ENST00000335508 ASXL1Q8IXJ9 1541 aa8.45□□□□□ -1.06
SF3B1-201ENST00000335508 ARHGEF10O15013 1369 aa8.45□□□□□ -1.06
SF3B1-201ENST00000335508 FRAT2O75474 233 aaPredicted RBP8.45□□□□□ -1.06
SF3B1-201ENST00000335508 GNAI2P04899 355 aa8.44□□□□□ -1.06
SF3B1-201ENST00000335508 IFIT2P09913 472 aaKnown RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms