RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 SLFN5Q08AF3 891 aa22.38■■□□□ 1.17
DDX41-201ENST00000330503 TRMT2AQ8IZ69 625 aaKnown RBP22.38■■□□□ 1.17
DDX41-201ENST00000330503 ZRANB1Q9UGI0 708 aa22.38■■□□□ 1.17
DDX41-201ENST00000330503 TOPAZ1Q8N9V7 1692 aa22.38■■□□□ 1.17
DDX41-201ENST00000330503 NUTM2FA1L443 756 aa22.37■■□□□ 1.17
DDX41-201ENST00000330503 KCNA6P17658 529 aa22.37■■□□□ 1.17
DDX41-201ENST00000330503 FBLN1P23142 703 aa22.37■■□□□ 1.17
DDX41-201ENST00000330503 PNPLA6Q8IY17 1366 aa22.37■■□□□ 1.17
DDX41-201ENST00000330503 ITSN1Q15811 1721 aa22.36■■□□□ 1.17
DDX41-201ENST00000330503 RRP1P56182 461 aaKnown RBP22.36■■□□□ 1.17
DDX41-201ENST00000330503 SPINK5Q9NQ38 1064 aaPredicted RBP22.36■■□□□ 1.17
DDX41-201ENST00000330503 POLKQ9UBT6 870 aa22.36■■□□□ 1.17
DDX41-201ENST00000330503 U2AF1L5P0DN76 240 aaPredicted RBP22.35■■□□□ 1.17
DDX41-201ENST00000330503 U2AF1Q01081 240 aaKnown RBP eCLIP22.35■■□□□ 1.173e-7■■■■□ 19.9
DDX41-201ENST00000330503 ACEP12821 1306 aa22.35■■□□□ 1.17
DDX41-201ENST00000330503 TCP11L2Q8N4U5 519 aa22.34■■□□□ 1.17
DDX41-201ENST00000330503 IQSEC2Q5JU85 1478 aa22.34■■□□□ 1.17
DDX41-201ENST00000330503 PELP1Q8IZL8 1130 aaKnown RBP22.34■■□□□ 1.17
DDX41-201ENST00000330503 DMRT2Q9Y5R5 561 aa22.34■■□□□ 1.17
DDX41-201ENST00000330503 NKTRP30414 1462 aaKnown RBP22.33■■□□□ 1.17
DDX41-201ENST00000330503 WWC1Q8IX03 1113 aa22.33■■□□□ 1.16
DDX41-201ENST00000330503 PHF23Q9BUL5 403 aaPredicted RBP22.31■■□□□ 1.16
DDX41-201ENST00000330503 TTC21BQ7Z4L5 1316 aa22.31■■□□□ 1.16
DDX41-201ENST00000330503 RRP7AQ9Y3A4 280 aaKnown RBP22.31■■□□□ 1.16
DDX41-201ENST00000330503 CHD2O14647 1828 aaKnown RBP22.3■■□□□ 1.16
DDX41-201ENST00000330503 MAP2P11137 1827 aaKnown RBP22.3■■□□□ 1.16
DDX41-201ENST00000330503 DIAPH1O60610 1272 aaKnown RBP22.3■■□□□ 1.16
DDX41-201ENST00000330503 U2SURPO15042 1029 aaKnown RBP22.3■■□□□ 1.16
DDX41-201ENST00000330503 COG3Q96JB2 828 aa22.3■■□□□ 1.16
DDX41-201ENST00000330503 PLEKHF1Q96S99 279 aa22.3■■□□□ 1.16
DDX41-201ENST00000330503 AATKQ6ZMQ8 1374 aa22.29■■□□□ 1.16
DDX41-201ENST00000330503 NRKQ7Z2Y5 1582 aa22.28■■□□□ 1.16
DDX41-201ENST00000330503 E9PSI1 815 aa22.28■■□□□ 1.16
DDX41-201ENST00000330503 NEUROD2Q15784 382 aa22.28■■□□□ 1.16
DDX41-201ENST00000330503 USP6P35125 1406 aa22.27■■□□□ 1.16
DDX41-201ENST00000330503 SSH2Q76I76 1423 aa22.27■■□□□ 1.16
DDX41-201ENST00000330503 NCBP3Q53F19 620 aaKnown RBP22.27■■□□□ 1.16
DDX41-201ENST00000330503 EMILIN1Q9Y6C2 1016 aa22.27■■□□□ 1.16
DDX41-201ENST00000330503 RGPD8O14715 1765 aaPredicted RBP22.27■■□□□ 1.16
DDX41-201ENST00000330503 B4GALNT3Q6L9W6 998 aa22.27■■□□□ 1.15
DDX41-201ENST00000330503 CCDC27Q2M243 656 aa22.26■■□□□ 1.15
DDX41-201ENST00000330503 PMFBP1Q8TBY8 1022 aa22.26■■□□□ 1.15
DDX41-201ENST00000330503 PPM1GO15355 546 aaPredicted RBP22.25■■□□□ 1.15
DDX41-201ENST00000330503 NPHP4O75161 1426 aaPredicted RBP22.25■■□□□ 1.15
DDX41-201ENST00000330503 PLIN1O60240 522 aa22.23■■□□□ 1.15
DDX41-201ENST00000330503 ANKARQ7Z5J8 1434 aa22.23■■□□□ 1.15
DDX41-201ENST00000330503 WDR63Q8IWG1 891 aa22.22■■□□□ 1.15
DDX41-201ENST00000330503 RRS1Q15050 365 aaKnown RBP22.22■■□□□ 1.15
DDX41-201ENST00000330503 FMN2Q9NZ56 1722 aa22.21■■□□□ 1.15
DDX41-201ENST00000330503 OVOS2A0A0J9YW53 1432 aa22.21■■□□□ 1.15
DDX41-201ENST00000330503 OVOS2Q6IE36 1432 aa22.21■■□□□ 1.15
DDX41-201ENST00000330503 IL13P35225 146 aa22.21■■□□□ 1.15
DDX41-201ENST00000330503 EXOC6Q8TAG9 804 aa22.21■■□□□ 1.15
DDX41-201ENST00000330503 CDK12Q9NYV4 1490 aaPredicted RBP22.2■■□□□ 1.14
DDX41-201ENST00000330503 NGDNQ8NEJ9 315 aaKnown RBP22.2■■□□□ 1.14
DDX41-201ENST00000330503 FCHSD2O94868 740 aa22.19■■□□□ 1.14
DDX41-201ENST00000330503 TMPOP42166 694 aaKnown RBP22.19■■□□□ 1.14
DDX41-201ENST00000330503 RBM33Q96EV2 1170 aaKnown RBP22.19■■□□□ 1.14
DDX41-201ENST00000330503 NALCNQ8IZF0 1738 aa22.18■■□□□ 1.14
DDX41-201ENST00000330503 TTC21AQ8NDW8 1320 aa22.18■■□□□ 1.14
DDX41-201ENST00000330503 RSPH6AQ9H0K4 717 aa22.18■■□□□ 1.14
DDX41-201ENST00000330503 TSHZ2Q9NRE2 1034 aa22.18■■□□□ 1.14
DDX41-201ENST00000330503 USP31Q70CQ4 1352 aa22.17■■□□□ 1.14
DDX41-201ENST00000330503 PNNQ9H307 717 aaKnown RBP22.16■■□□□ 1.14
DDX41-201ENST00000330503 TRIM35Q9UPQ4 493 aa22.16■■□□□ 1.14
DDX41-201ENST00000330503 MAPK8IP3Q9UPT6 1336 aa22.15■■□□□ 1.14
DDX41-201ENST00000330503 LRRC7Q96NW7 1537 aa22.14■■□□□ 1.13
DDX41-201ENST00000330503 C20orf194Q5TEA3 1177 aa22.13■■□□□ 1.13
DDX41-201ENST00000330503 PRKAR2BP31323 418 aa22.13■■□□□ 1.13
DDX41-201ENST00000330503 CCDC136Q96JN2 1154 aa22.13■■□□□ 1.13
DDX41-201ENST00000330503 ADGRL3Q9HAR2 1447 aa22.12■■□□□ 1.13
DDX41-201ENST00000330503 HMOX1P09601 288 aa22.12■■□□□ 1.13
DDX41-201ENST00000330503 CRBNQ96SW2 442 aa22.12■■□□□ 1.13
DDX41-201ENST00000330503 BCAR3O75815 825 aa22.11■■□□□ 1.13
DDX41-201ENST00000330503 RIPK4P57078 832 aa22.11■■□□□ 1.13
DDX41-201ENST00000330503 PHACTR3Q96KR7 559 aa22.1■■□□□ 1.13
DDX41-201ENST00000330503 PHF8Q9UPP1 1060 aa22.1■■□□□ 1.13
DDX41-201ENST00000330503 PIK3C2AO00443 1686 aa22.1■■□□□ 1.13
DDX41-201ENST00000330503 NWD1Q149M9 1564 aa22.09■■□□□ 1.13
DDX41-201ENST00000330503 PEAK1Q9H792 1746 aa22.09■■□□□ 1.13
DDX41-201ENST00000330503 EIF4A2Q14240 407 aaKnown RBP22.08■■□□□ 1.13
DDX41-201ENST00000330503 MYH16Q9H6N6 1097 aa22.07■■□□□ 1.12
DDX41-201ENST00000330503 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.07■■□□□ 1.12
DDX41-201ENST00000330503 IL16Q14005 1332 aa22.06■■□□□ 1.12
DDX41-201ENST00000330503 SOX12O15370 315 aa22.06■■□□□ 1.12
DDX41-201ENST00000330503 HSP90AB2PQ58FF8 381 aa22.06■■□□□ 1.12
DDX41-201ENST00000330503 NLRP6P59044 892 aa22.05■■□□□ 1.12
DDX41-201ENST00000330503 NFE2L2Q16236 605 aa22.05■■□□□ 1.12
DDX41-201ENST00000330503 MAP3K19Q56UN5 1328 aa22.05■■□□□ 1.12
DDX41-201ENST00000330503 RARSP54136 660 aaKnown RBP22.04■■□□□ 1.12
DDX41-201ENST00000330503 PROSER2Q86WR7 435 aaPredicted RBP22.04■■□□□ 1.12
DDX41-201ENST00000330503 MARF1Q9Y4F3 1742 aaKnown RBP22.03■■□□□ 1.12
DDX41-201ENST00000330503 FANCIQ9NVI1 1328 aa22.03■■□□□ 1.12
DDX41-201ENST00000330503 NEFMP07197 916 aa22.03■■□□□ 1.12
DDX41-201ENST00000330503 C14orf37Q86TY3 774 aa22.03■■□□□ 1.12
DDX41-201ENST00000330503 TSR2Q969E8 191 aaKnown RBP22.03■■□□□ 1.12
DDX41-201ENST00000330503 ESCO1Q5FWF5 840 aa22.02■■□□□ 1.12
DDX41-201ENST00000330503 NUTM2GQ5VZR2 741 aa22.02■■□□□ 1.12
DDX41-201ENST00000330503 USP54Q70EL1 1684 aa22.01■■□□□ 1.11
DDX41-201ENST00000330503 ABTB2Q8N961 1025 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms