RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.83■□□□□ 0.6
TPM3-206ENST00000330188 COG6Q9Y2V7 657 aa18.83■□□□□ 0.6
TPM3-206ENST00000330188 FRAT1Q92837 279 aaPredicted RBP18.82■□□□□ 0.6
TPM3-206ENST00000330188 METP08581 1390 aa18.82■□□□□ 0.6
TPM3-206ENST00000330188 CDC42BPGQ6DT37 1551 aa18.82■□□□□ 0.6
TPM3-206ENST00000330188 TMPOP42166 694 aaKnown RBP18.81■□□□□ 0.6
TPM3-206ENST00000330188 CLUAP1Q96AJ1 413 aa18.81■□□□□ 0.6
TPM3-206ENST00000330188 DIAPH1O60610 1272 aaKnown RBP18.8■□□□□ 0.6
TPM3-206ENST00000330188 IGHDP01880 384 aa18.8■□□□□ 0.6
TPM3-206ENST00000330188 ESF1Q9H501 851 aaKnown RBP18.8■□□□□ 0.6
TPM3-206ENST00000330188 TRIM35Q9UPQ4 493 aa18.8■□□□□ 0.6
TPM3-206ENST00000330188 MAPK8IP3Q9UPT6 1336 aa18.79■□□□□ 0.6
TPM3-206ENST00000330188 CPSF1Q10570 1443 aaKnown RBP18.79■□□□□ 0.6
TPM3-206ENST00000330188 UBR1Q8IWV7 1749 aa18.78■□□□□ 0.6
TPM3-206ENST00000330188 WASLO00401 505 aaPredicted RBP18.78■□□□□ 0.6
TPM3-206ENST00000330188 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.78■□□□□ 0.6
TPM3-206ENST00000330188 BCL2L13Q9BXK5 485 aa18.78■□□□□ 0.6
TPM3-206ENST00000330188 MAP2P11137 1827 aaKnown RBP18.78■□□□□ 0.6
TPM3-206ENST00000330188 TNRQ92752 1358 aa18.78■□□□□ 0.6
TPM3-206ENST00000330188 CPS1P31327 1500 aa18.78■□□□□ 0.6
TPM3-206ENST00000330188 FAM161AQ3B820 660 aa18.77■□□□□ 0.6
TPM3-206ENST00000330188 TNNQ9UQP3 1299 aa18.77■□□□□ 0.6
TPM3-206ENST00000330188 TECPR2O15040 1411 aa18.77■□□□□ 0.6
TPM3-206ENST00000330188 PPIP5K1Q6PFW1 1433 aa18.77■□□□□ 0.6
TPM3-206ENST00000330188 RLBP1P12271 317 aa18.77■□□□□ 0.6
TPM3-206ENST00000330188 C8orf34Q49A92 452 aa18.77■□□□□ 0.6
TPM3-206ENST00000330188 FAM135BQ49AJ0 1406 aa18.77■□□□□ 0.6
TPM3-206ENST00000330188 EDC4Q6P2E9 1401 aaKnown RBP18.76■□□□□ 0.59
TPM3-206ENST00000330188 CT47B1P0C2W7 299 aaPredicted RBP18.76■□□□□ 0.59
TPM3-206ENST00000330188 RGS3P49796 1198 aa18.76■□□□□ 0.59
TPM3-206ENST00000330188 TSR2Q969E8 191 aaKnown RBP18.76■□□□□ 0.59
TPM3-206ENST00000330188 LRRC7Q96NW7 1537 aa18.76■□□□□ 0.59
TPM3-206ENST00000330188 AAMPQ13685 434 aa18.76■□□□□ 0.59
TPM3-206ENST00000330188 POLKQ9UBT6 870 aa18.76■□□□□ 0.59
TPM3-206ENST00000330188 MON2Q7Z3U7 1717 aa18.75■□□□□ 0.59
TPM3-206ENST00000330188 IL16Q14005 1332 aa18.75■□□□□ 0.59
TPM3-206ENST00000330188 TXNDC2Q86VQ3 553 aa18.75■□□□□ 0.59
TPM3-206ENST00000330188 SIRT1Q96EB6 747 aa18.74■□□□□ 0.59
TPM3-206ENST00000330188 PNNQ9H307 717 aaKnown RBP18.74■□□□□ 0.59
TPM3-206ENST00000330188 HDGFP51858 240 aaKnown RBP18.74■□□□□ 0.59
TPM3-206ENST00000330188 VIRMAQ69YN4 1812 aaKnown RBP18.74■□□□□ 0.59
TPM3-206ENST00000330188 AKAP12Q02952 1782 aa18.74■□□□□ 0.59
TPM3-206ENST00000330188 FBLN1P23142 703 aa18.73■□□□□ 0.59
TPM3-206ENST00000330188 RIPK4P57078 832 aa18.73■□□□□ 0.59
TPM3-206ENST00000330188 TMEM2Q9UHN6 1383 aa18.73■□□□□ 0.59
TPM3-206ENST00000330188 EXOSC9Q06265 439 aaKnown RBP18.73■□□□□ 0.59
TPM3-206ENST00000330188 FCHSD2O94868 740 aa18.72■□□□□ 0.59
TPM3-206ENST00000330188 ITSN1Q15811 1721 aa18.71■□□□□ 0.59
TPM3-206ENST00000330188 NUDT16Q96DE0 195 aaKnown RBP18.71■□□□□ 0.59
TPM3-206ENST00000330188 RSPH6AQ9H0K4 717 aa18.71■□□□□ 0.59
TPM3-206ENST00000330188 C3P01024 1663 aa18.7■□□□□ 0.58
TPM3-206ENST00000330188 PMFBP1Q8TBY8 1022 aa18.7■□□□□ 0.58
TPM3-206ENST00000330188 PCDHB15Q9Y5E8 787 aa18.7■□□□□ 0.58
TPM3-206ENST00000330188 NBR1Q14596 966 aa18.7■□□□□ 0.58
TPM3-206ENST00000330188 ZKSCAN2Q63HK3 967 aa18.7■□□□□ 0.58
TPM3-206ENST00000330188 NME9Q86XW9 330 aa18.7■□□□□ 0.58
TPM3-206ENST00000330188 DDRGK1Q96HY6 314 aa18.7■□□□□ 0.58
TPM3-206ENST00000330188 PPM1GO15355 546 aaPredicted RBP18.69■□□□□ 0.58
TPM3-206ENST00000330188 MVPQ14764 893 aaKnown RBP18.69■□□□□ 0.58
TPM3-206ENST00000330188 ADAMTS13Q76LX8 1427 aa18.69■□□□□ 0.58
TPM3-206ENST00000330188 CDK12Q9NYV4 1490 aaPredicted RBP18.69■□□□□ 0.58
TPM3-206ENST00000330188 PRKAR2BP31323 418 aa18.68■□□□□ 0.58
TPM3-206ENST00000330188 CCDC61Q9Y6R9 512 aa18.68■□□□□ 0.58
TPM3-206ENST00000330188 NCKAP5LQ9HCH0 1330 aa18.68■□□□□ 0.58
TPM3-206ENST00000330188 AATKQ6ZMQ8 1374 aa18.68■□□□□ 0.58
TPM3-206ENST00000330188 SMC4Q9NTJ3 1288 aa18.68■□□□□ 0.58
TPM3-206ENST00000330188 EMILIN1Q9Y6C2 1016 aa18.68■□□□□ 0.58
TPM3-206ENST00000330188 DZIP1LQ8IYY4 767 aaKnown RBP18.67■□□□□ 0.58
TPM3-206ENST00000330188 ZRANB1Q9UGI0 708 aa18.67■□□□□ 0.58
TPM3-206ENST00000330188 SSH1Q8WYL5 1049 aa18.67■□□□□ 0.58
TPM3-206ENST00000330188 ROBO2Q9HCK4 1378 aa18.67■□□□□ 0.58
TPM3-206ENST00000330188 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.66■□□□□ 0.58
TPM3-206ENST00000330188 PRR36Q9H6K5 1346 aa18.65■□□□□ 0.58
TPM3-206ENST00000330188 IL13P35225 146 aa18.65■□□□□ 0.58
TPM3-206ENST00000330188 FTSJ3Q8IY81 847 aaKnown RBP18.65■□□□□ 0.58
TPM3-206ENST00000330188 TOPAZ1Q8N9V7 1692 aa18.64■□□□□ 0.58
TPM3-206ENST00000330188 PLEKHG1Q9ULL1 1385 aa18.64■□□□□ 0.57
TPM3-206ENST00000330188 TRIM27P14373 513 aa18.64■□□□□ 0.57
TPM3-206ENST00000330188 COG3Q96JB2 828 aa18.64■□□□□ 0.57
TPM3-206ENST00000330188 NRKQ7Z2Y5 1582 aa18.63■□□□□ 0.57
TPM3-206ENST00000330188 NEFMP07197 916 aa18.63■□□□□ 0.57
TPM3-206ENST00000330188 HMOX1P09601 288 aa18.63■□□□□ 0.57
TPM3-206ENST00000330188 NFE2L2Q16236 605 aa18.63■□□□□ 0.57
TPM3-206ENST00000330188 PHACTR3Q96KR7 559 aa18.63■□□□□ 0.57
TPM3-206ENST00000330188 ATF7IPQ6VMQ6 1270 aa18.62■□□□□ 0.57
TPM3-206ENST00000330188 ZNF692Q9BU19 519 aaPredicted RBP18.62■□□□□ 0.57
TPM3-206ENST00000330188 RWDD1Q9H446 243 aaPredicted RBP18.62■□□□□ 0.57
TPM3-206ENST00000330188 LTKP29376 864 aa18.61■□□□□ 0.57
TPM3-206ENST00000330188 NOB1Q9ULX3 412 aaKnown RBP18.61■□□□□ 0.57
TPM3-206ENST00000330188 DLG5Q8TDM6 1919 aa18.61■□□□□ 0.57
TPM3-206ENST00000330188 PDZRN3Q9UPQ7 1066 aa18.6■□□□□ 0.57
TPM3-206ENST00000330188 RRS1Q15050 365 aaKnown RBP18.59■□□□□ 0.57
TPM3-206ENST00000330188 ALDH1L2Q3SY69 923 aa18.59■□□□□ 0.57
TPM3-206ENST00000330188 KIF16BQ96L93 1317 aa18.59■□□□□ 0.57
TPM3-206ENST00000330188 DDX19BQ9UMR2 479 aa18.58■□□□□ 0.57
TPM3-206ENST00000330188 LAS1LQ9Y4W2 734 aaKnown RBP18.58■□□□□ 0.57
TPM3-206ENST00000330188 PTPRUQ92729 1446 aa18.58■□□□□ 0.56
TPM3-206ENST00000330188 CEBPAP49715 358 aaPredicted RBP18.57■□□□□ 0.56
TPM3-206ENST00000330188 ITPRIPQ8IWB1 547 aa18.57■□□□□ 0.56
TPM3-206ENST00000330188 THUMPD2Q9BTF0 503 aaKnown RBP18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms