RNA–Protein interactions for RNA: ENST00000328159.8

TPM3-205, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,771 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-205ENST00000328159 PPP4R2Q9NY27 417 aa19.7■□□□□ 0.74
TPM3-205ENST00000328159 CHD2O14647 1828 aaKnown RBP19.7■□□□□ 0.74
TPM3-205ENST00000328159 IQSEC2Q5JU85 1478 aa19.69■□□□□ 0.74
TPM3-205ENST00000328159 PLEKHG3A1L390 1219 aa19.69■□□□□ 0.74
TPM3-205ENST00000328159 NME9Q86XW9 330 aa19.69■□□□□ 0.74
TPM3-205ENST00000328159 KCNA6P17658 529 aa19.68■□□□□ 0.74
TPM3-205ENST00000328159 NRKQ7Z2Y5 1582 aa19.68■□□□□ 0.74
TPM3-205ENST00000328159 MAP2P11137 1827 aaKnown RBP19.68■□□□□ 0.74
TPM3-205ENST00000328159 NKTRP30414 1462 aaKnown RBP19.68■□□□□ 0.74
TPM3-205ENST00000328159 U2AF1L5P0DN76 240 aaPredicted RBP19.67■□□□□ 0.74
TPM3-205ENST00000328159 U2AF1Q01081 240 aaKnown RBP eCLIP19.67■□□□□ 0.747e-10■■□□□ 13
TPM3-205ENST00000328159 PNPLA6Q8IY17 1366 aa19.67■□□□□ 0.74
TPM3-205ENST00000328159 NUTM2FA1L443 756 aa19.67■□□□□ 0.74
TPM3-205ENST00000328159 RRP1P56182 461 aaKnown RBP19.67■□□□□ 0.74
TPM3-205ENST00000328159 SLFN5Q08AF3 891 aa19.67■□□□□ 0.74
TPM3-205ENST00000328159 DUSP27Q5VZP5 1158 aa19.67■□□□□ 0.74
TPM3-205ENST00000328159 ACEP12821 1306 aa19.66■□□□□ 0.74
TPM3-205ENST00000328159 RGPD8O14715 1765 aaPredicted RBP19.65■□□□□ 0.74
TPM3-205ENST00000328159 TCP11L2Q8N4U5 519 aa19.65■□□□□ 0.74
TPM3-205ENST00000328159 POLKQ9UBT6 870 aa19.65■□□□□ 0.74
TPM3-205ENST00000328159 TRMT2AQ8IZ69 625 aaKnown RBP19.64■□□□□ 0.73
TPM3-205ENST00000328159 COG3Q96JB2 828 aa19.64■□□□□ 0.73
TPM3-205ENST00000328159 ZRANB1Q9UGI0 708 aa19.64■□□□□ 0.73
TPM3-205ENST00000328159 DIAPH1O60610 1272 aaKnown RBP19.63■□□□□ 0.73
TPM3-205ENST00000328159 TTC21BQ7Z4L5 1316 aa19.63■□□□□ 0.73
TPM3-205ENST00000328159 AATKQ6ZMQ8 1374 aa19.63■□□□□ 0.73
TPM3-205ENST00000328159 FMN2Q9NZ56 1722 aa19.63■□□□□ 0.73
TPM3-205ENST00000328159 NPHP4O75161 1426 aaPredicted RBP19.63■□□□□ 0.73
TPM3-205ENST00000328159 USP6P35125 1406 aa19.63■□□□□ 0.73
TPM3-205ENST00000328159 U2SURPO15042 1029 aaKnown RBP19.62■□□□□ 0.73
TPM3-205ENST00000328159 E9PSI1 815 aa19.62■□□□□ 0.73
TPM3-205ENST00000328159 WWC1Q8IX03 1113 aa19.62■□□□□ 0.73
TPM3-205ENST00000328159 ANKARQ7Z5J8 1434 aa19.62■□□□□ 0.73
TPM3-205ENST00000328159 FBLN1P23142 703 aa19.61■□□□□ 0.73
TPM3-205ENST00000328159 NCBP3Q53F19 620 aaKnown RBP19.61■□□□□ 0.73
TPM3-205ENST00000328159 PHF23Q9BUL5 403 aaPredicted RBP19.6■□□□□ 0.73
TPM3-205ENST00000328159 SPINK5Q9NQ38 1064 aaPredicted RBP19.6■□□□□ 0.73
TPM3-205ENST00000328159 RRP7AQ9Y3A4 280 aaKnown RBP19.6■□□□□ 0.73
TPM3-205ENST00000328159 NALCNQ8IZF0 1738 aa19.59■□□□□ 0.73
TPM3-205ENST00000328159 CDK12Q9NYV4 1490 aaPredicted RBP19.59■□□□□ 0.73
TPM3-205ENST00000328159 SSH2Q76I76 1423 aa19.59■□□□□ 0.73
TPM3-205ENST00000328159 NEUROD2Q15784 382 aa19.59■□□□□ 0.73
TPM3-205ENST00000328159 CCDC27Q2M243 656 aa19.59■□□□□ 0.73
TPM3-205ENST00000328159 DMRT2Q9Y5R5 561 aa19.59■□□□□ 0.73
TPM3-205ENST00000328159 PPM1GO15355 546 aaPredicted RBP19.58■□□□□ 0.73
TPM3-205ENST00000328159 EMILIN1Q9Y6C2 1016 aa19.58■□□□□ 0.73
TPM3-205ENST00000328159 PLEKHF1Q96S99 279 aa19.57■□□□□ 0.72
TPM3-205ENST00000328159 OVOS2A0A0J9YW53 1432 aa19.57■□□□□ 0.72
TPM3-205ENST00000328159 OVOS2Q6IE36 1432 aa19.57■□□□□ 0.72
TPM3-205ENST00000328159 PMFBP1Q8TBY8 1022 aa19.57■□□□□ 0.72
TPM3-205ENST00000328159 TTC21AQ8NDW8 1320 aa19.55■□□□□ 0.72
TPM3-205ENST00000328159 B4GALNT3Q6L9W6 998 aa19.55■□□□□ 0.72
TPM3-205ENST00000328159 WDR63Q8IWG1 891 aa19.55■□□□□ 0.72
TPM3-205ENST00000328159 NGDNQ8NEJ9 315 aaKnown RBP19.55■□□□□ 0.72
TPM3-205ENST00000328159 PNNQ9H307 717 aaKnown RBP19.55■□□□□ 0.72
TPM3-205ENST00000328159 MAPK8IP3Q9UPT6 1336 aa19.54■□□□□ 0.72
TPM3-205ENST00000328159 FCHSD2O94868 740 aa19.53■□□□□ 0.72
TPM3-205ENST00000328159 LRRC7Q96NW7 1537 aa19.53■□□□□ 0.72
TPM3-205ENST00000328159 RRS1Q15050 365 aaKnown RBP19.52■□□□□ 0.72
TPM3-205ENST00000328159 NWD1Q149M9 1564 aa19.52■□□□□ 0.72
TPM3-205ENST00000328159 ADGRL3Q9HAR2 1447 aa19.52■□□□□ 0.72
TPM3-205ENST00000328159 IL13P35225 146 aa19.52■□□□□ 0.71
TPM3-205ENST00000328159 USP31Q70CQ4 1352 aa19.52■□□□□ 0.71
TPM3-205ENST00000328159 PLIN1O60240 522 aa19.51■□□□□ 0.71
TPM3-205ENST00000328159 TMPOP42166 694 aaKnown RBP19.51■□□□□ 0.71
TPM3-205ENST00000328159 EXOC6Q8TAG9 804 aa19.5■□□□□ 0.71
TPM3-205ENST00000328159 RSPH6AQ9H0K4 717 aa19.49■□□□□ 0.71
TPM3-205ENST00000328159 PIK3C2AO00443 1686 aa19.49■□□□□ 0.71
TPM3-205ENST00000328159 RBM33Q96EV2 1170 aaKnown RBP19.48■□□□□ 0.71
TPM3-205ENST00000328159 PRKAR2BP31323 418 aa19.47■□□□□ 0.71
TPM3-205ENST00000328159 CCDC136Q96JN2 1154 aa19.47■□□□□ 0.71
TPM3-205ENST00000328159 PEAK1Q9H792 1746 aa19.47■□□□□ 0.71
TPM3-205ENST00000328159 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.47■□□□□ 0.71
TPM3-205ENST00000328159 TRIM35Q9UPQ4 493 aa19.47■□□□□ 0.71
TPM3-205ENST00000328159 MYH16Q9H6N6 1097 aa19.46■□□□□ 0.71
TPM3-205ENST00000328159 TSHZ2Q9NRE2 1034 aa19.46■□□□□ 0.71
TPM3-205ENST00000328159 NEFMP07197 916 aa19.45■□□□□ 0.7
TPM3-205ENST00000328159 RIPK4P57078 832 aa19.45■□□□□ 0.7
TPM3-205ENST00000328159 PHF8Q9UPP1 1060 aa19.45■□□□□ 0.7
TPM3-205ENST00000328159 USP54Q70EL1 1684 aa19.45■□□□□ 0.7
TPM3-205ENST00000328159 HMOX1P09601 288 aa19.44■□□□□ 0.7
TPM3-205ENST00000328159 CRBNQ96SW2 442 aa19.44■□□□□ 0.7
TPM3-205ENST00000328159 MARF1Q9Y4F3 1742 aaKnown RBP19.43■□□□□ 0.7
TPM3-205ENST00000328159 C14orf37Q86TY3 774 aa19.43■□□□□ 0.7
TPM3-205ENST00000328159 IL16Q14005 1332 aa19.42■□□□□ 0.7
TPM3-205ENST00000328159 EIF4A2Q14240 407 aaKnown RBP19.42■□□□□ 0.7
TPM3-205ENST00000328159 C20orf194Q5TEA3 1177 aa19.42■□□□□ 0.7
TPM3-205ENST00000328159 BCAR3O75815 825 aa19.41■□□□□ 0.7
TPM3-205ENST00000328159 SOX12O15370 315 aa19.4■□□□□ 0.7
TPM3-205ENST00000328159 NLRP6P59044 892 aa19.4■□□□□ 0.7
TPM3-205ENST00000328159 NFE2L2Q16236 605 aa19.4■□□□□ 0.7
TPM3-205ENST00000328159 PROSER2Q86WR7 435 aaPredicted RBP19.4■□□□□ 0.7
TPM3-205ENST00000328159 PHACTR3Q96KR7 559 aa19.4■□□□□ 0.7
TPM3-205ENST00000328159 MAP3K19Q56UN5 1328 aa19.4■□□□□ 0.7
TPM3-205ENST00000328159 RGPD1P0DJD0 1748 aa19.39■□□□□ 0.69
TPM3-205ENST00000328159 SBNO1A3KN83 1393 aa19.39■□□□□ 0.69
TPM3-205ENST00000328159 ESCO1Q5FWF5 840 aa19.39■□□□□ 0.69
TPM3-205ENST00000328159 FANCIQ9NVI1 1328 aa19.38■□□□□ 0.69
TPM3-205ENST00000328159 HSP90AB2PQ58FF8 381 aa19.38■□□□□ 0.69
TPM3-205ENST00000328159 FLT4P35916 1363 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms