RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.99■□□□□ 0.47
TCOF1-201ENST00000323668 KDM2BQ8NHM5 1336 aa17.99■□□□□ 0.47
TCOF1-201ENST00000323668 TAOK2Q9UL54 1235 aa17.98■□□□□ 0.47
TCOF1-201ENST00000323668 NEK4P51957 841 aa17.98■□□□□ 0.47
TCOF1-201ENST00000323668 DIAPH3Q9NSV4 1193 aa17.98■□□□□ 0.47
TCOF1-201ENST00000323668 POLR3AO14802 1390 aaPredicted RBP17.97■□□□□ 0.47
TCOF1-201ENST00000323668 A2MP01023 1474 aa17.97■□□□□ 0.47
TCOF1-201ENST00000323668 RAPGEF3O95398 923 aa17.97■□□□□ 0.47
TCOF1-201ENST00000323668 NOS1P29475 1434 aa17.97■□□□□ 0.47
TCOF1-201ENST00000323668 VSIG10Q8N0Z9 540 aa17.97■□□□□ 0.47
TCOF1-201ENST00000323668 RUFY2Q8WXA3 655 aa17.97■□□□□ 0.47
TCOF1-201ENST00000323668 CARD14Q9BXL6 1004 aa17.96■□□□□ 0.47
TCOF1-201ENST00000323668 PLCH2O75038 1416 aa17.96■□□□□ 0.47
TCOF1-201ENST00000323668 PRPF40AO75400 957 aaKnown RBP17.96■□□□□ 0.47
TCOF1-201ENST00000323668 EIF2S2P20042 333 aaKnown RBP17.96■□□□□ 0.47
TCOF1-201ENST00000323668 THUMPD2Q9BTF0 503 aaKnown RBP17.96■□□□□ 0.47
TCOF1-201ENST00000323668 CWC22Q9HCG8 908 aaKnown RBP17.96■□□□□ 0.47
TCOF1-201ENST00000323668 CCDC173Q0VFZ6 552 aa17.96■□□□□ 0.46
TCOF1-201ENST00000323668 SULT6B1Q6IMI4 303 aa17.96■□□□□ 0.46
TCOF1-201ENST00000323668 EIF2AK4Q9P2K8 1649 aaKnown RBP17.96■□□□□ 0.46
TCOF1-201ENST00000323668 ESPNB1AK53 854 aa17.95■□□□□ 0.46
TCOF1-201ENST00000323668 GNAI3P08754 354 aa17.95■□□□□ 0.46
TCOF1-201ENST00000323668 CCDC27Q2M243 656 aa17.95■□□□□ 0.46
TCOF1-201ENST00000323668 NSD2O96028 1365 aa17.95■□□□□ 0.46
TCOF1-201ENST00000323668 MCM2P49736 904 aa17.95■□□□□ 0.46
TCOF1-201ENST00000323668 TEFQ10587 303 aa17.95■□□□□ 0.46
TCOF1-201ENST00000323668 CYB5RLQ6IPT4 315 aa17.95■□□□□ 0.46
TCOF1-201ENST00000323668 MBD3O95983 291 aa17.94■□□□□ 0.46
TCOF1-201ENST00000323668 SLC4A2P04920 1241 aa17.94■□□□□ 0.46
TCOF1-201ENST00000323668 ADGRL1O94910 1474 aa17.94■□□□□ 0.46
TCOF1-201ENST00000323668 BLMP54132 1417 aaPredicted RBP17.94■□□□□ 0.46
TCOF1-201ENST00000323668 A0A0G2JS52 829 aa17.93■□□□□ 0.46
TCOF1-201ENST00000323668 HDAC1Q13547 482 aaPredicted RBP17.93■□□□□ 0.46
TCOF1-201ENST00000323668 ZKSCAN1P17029 563 aaPredicted RBP17.93■□□□□ 0.46
TCOF1-201ENST00000323668 NPC1L1Q9UHC9 1359 aa17.93■□□□□ 0.46
TCOF1-201ENST00000323668 RPAP2Q8IXW5 612 aaPredicted RBP17.93■□□□□ 0.46
TCOF1-201ENST00000323668 RLBP1P12271 317 aa17.93■□□□□ 0.46
TCOF1-201ENST00000323668 ZMYM4Q5VZL5 1548 aa17.93■□□□□ 0.46
TCOF1-201ENST00000323668 ERC2O15083 957 aa17.92■□□□□ 0.46
TCOF1-201ENST00000323668 TXNDC2Q86VQ3 553 aa17.92■□□□□ 0.46
TCOF1-201ENST00000323668 RNF214Q8ND24 703 aa17.92■□□□□ 0.46
TCOF1-201ENST00000323668 C9orf78Q9NZ63 289 aaPredicted RBP17.92■□□□□ 0.46
TCOF1-201ENST00000323668 HSP90B1P14625 803 aaKnown RBP17.92■□□□□ 0.46
TCOF1-201ENST00000323668 ZNF692Q9BU19 519 aaPredicted RBP17.92■□□□□ 0.46
TCOF1-201ENST00000323668 SEC24BO95487 1268 aa17.91■□□□□ 0.46
TCOF1-201ENST00000323668 UBTFL1P0CB47 393 aaPredicted RBP17.91■□□□□ 0.46
TCOF1-201ENST00000323668 RTEL1-TNFRSF6BF6WH68 1400 aa17.91■□□□□ 0.46
TCOF1-201ENST00000323668 IL16Q14005 1332 aa17.91■□□□□ 0.46
TCOF1-201ENST00000323668 FAM13BQ9NYF5 915 aa17.91■□□□□ 0.46
TCOF1-201ENST00000323668 SMC3Q9UQE7 1217 aa17.91■□□□□ 0.46
TCOF1-201ENST00000323668 GNAI2P04899 355 aa17.91■□□□□ 0.46
TCOF1-201ENST00000323668 TNNQ9UQP3 1299 aa17.91■□□□□ 0.46
TCOF1-201ENST00000323668 BMP2KLQ5H9B9 411 aa17.91■□□□□ 0.46
TCOF1-201ENST00000323668 HSP90AB4PQ58FF6 505 aa17.9■□□□□ 0.46
TCOF1-201ENST00000323668 IFT57Q9NWB7 429 aa17.9■□□□□ 0.46
TCOF1-201ENST00000323668 IDI1Q13907 227 aa17.89■□□□□ 0.46
TCOF1-201ENST00000323668 RRS1Q15050 365 aaKnown RBP17.89■□□□□ 0.45
TCOF1-201ENST00000323668 CCDC30Q5VVM6 783 aa17.89■□□□□ 0.45
TCOF1-201ENST00000323668 IFIT2P09913 472 aaKnown RBP17.89■□□□□ 0.45
TCOF1-201ENST00000323668 TNPO1Q92973 898 aaKnown RBP17.89■□□□□ 0.45
TCOF1-201ENST00000323668 TRAPPC8Q9Y2L5 1435 aa17.89■□□□□ 0.45
TCOF1-201ENST00000323668 CCT4P50991 539 aaKnown RBP17.88■□□□□ 0.45
TCOF1-201ENST00000323668 FAM69CQ0P6D2 419 aa17.88■□□□□ 0.45
TCOF1-201ENST00000323668 GAS2L2Q8NHY3 880 aa17.88■□□□□ 0.45
TCOF1-201ENST00000323668 KDM5BQ9UGL1 1544 aa17.88■□□□□ 0.45
TCOF1-201ENST00000323668 FANCAO15360 1455 aa17.88■□□□□ 0.45
TCOF1-201ENST00000323668 R3HCC1Q9Y3T6 440 aaKnown RBP17.88■□□□□ 0.45
TCOF1-201ENST00000323668 SURF6O75683 361 aaKnown RBP17.87■□□□□ 0.45
TCOF1-201ENST00000323668 CCDC39Q9UFE4 941 aa17.87■□□□□ 0.45
TCOF1-201ENST00000323668 KIF3AQ9Y496 699 aa17.87■□□□□ 0.45
TCOF1-201ENST00000323668 KDM5CP41229 1560 aa17.87■□□□□ 0.45
TCOF1-201ENST00000323668 PBRM1Q86U86 1689 aa17.86■□□□□ 0.45
TCOF1-201ENST00000323668 TPM2P07951 284 aa17.86■□□□□ 0.45
TCOF1-201ENST00000323668 CHMP3Q9Y3E7 222 aa17.86■□□□□ 0.45
TCOF1-201ENST00000323668 CCDC61Q9Y6R9 512 aa17.86■□□□□ 0.45
TCOF1-201ENST00000323668 CSB-PGBD3P0DP91 1061 aa17.86■□□□□ 0.45
TCOF1-201ENST00000323668 VPS37CA5D8V6 355 aaPredicted RBP17.86■□□□□ 0.45
TCOF1-201ENST00000323668 C1orf141Q5JVX7 400 aa17.86■□□□□ 0.45
TCOF1-201ENST00000323668 DMRT2Q9Y5R5 561 aa17.86■□□□□ 0.45
TCOF1-201ENST00000323668 NUCB1Q02818 461 aa17.85■□□□□ 0.45
TCOF1-201ENST00000323668 NLRP6P59044 892 aa17.85■□□□□ 0.45
TCOF1-201ENST00000323668 LRRCC1Q9C099 1032 aa17.85■□□□□ 0.45
TCOF1-201ENST00000323668 H3BQV1 296 aa17.85■□□□□ 0.45
TCOF1-201ENST00000323668 IFFO2Q5TF58 517 aa17.85■□□□□ 0.45
TCOF1-201ENST00000323668 ANKRD36BQ8N2N9 1353 aa17.85■□□□□ 0.45
TCOF1-201ENST00000323668 GNL2Q13823 731 aaKnown RBP17.84■□□□□ 0.45
TCOF1-201ENST00000323668 TBC1D9Q6ZT07 1266 aa17.84■□□□□ 0.45
TCOF1-201ENST00000323668 WAPLQ7Z5K2 1190 aa17.84■□□□□ 0.45
TCOF1-201ENST00000323668 DCTN1Q14203 1278 aa17.84■□□□□ 0.45
TCOF1-201ENST00000323668 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.84■□□□□ 0.45
TCOF1-201ENST00000323668 FAM184AQ8NB25 1140 aa17.83■□□□□ 0.45
TCOF1-201ENST00000323668 DENND4BO75064 1496 aaPredicted RBP17.83■□□□□ 0.45
TCOF1-201ENST00000323668 RNF20Q5VTR2 975 aa17.83■□□□□ 0.45
TCOF1-201ENST00000323668 EMILIN1Q9Y6C2 1016 aa17.83■□□□□ 0.45
TCOF1-201ENST00000323668 FYB1O15117 783 aa17.83■□□□□ 0.44
TCOF1-201ENST00000323668 GORABQ5T7V8 394 aa17.83■□□□□ 0.44
TCOF1-201ENST00000323668 CNTROBQ8N137 903 aa17.83■□□□□ 0.44
TCOF1-201ENST00000323668 G3BP1Q13283 466 aaKnown RBP eCLIP17.82■□□□□ 0.442e-7■■■■□ 22.1
TCOF1-201ENST00000323668 PUS7Q96PZ0 661 aaKnown RBP17.82■□□□□ 0.44
TCOF1-201ENST00000323668 TARBP1Q13395 1621 aaKnown RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms