RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 RPGRIP1LQ68CZ1 1315 aa16.96■□□□□ 0.31
SKA3-202ENST00000314759 U2SURPO15042 1029 aaKnown RBP16.96■□□□□ 0.3
SKA3-202ENST00000314759 NUTM2DQ5VT03 806 aaPredicted RBP16.95■□□□□ 0.3
SKA3-202ENST00000314759 GGT6Q6P531 493 aa16.95■□□□□ 0.3
SKA3-202ENST00000314759 TRAK2O60296 914 aa16.94■□□□□ 0.3
SKA3-202ENST00000314759 CLCN1P35523 988 aa16.94■□□□□ 0.3
SKA3-202ENST00000314759 TMEM57Q8N5G2 664 aa16.94■□□□□ 0.3
SKA3-202ENST00000314759 ZBTB40Q9NUA8 1239 aa16.94■□□□□ 0.3
SKA3-202ENST00000314759 ZNF692Q9BU19 519 aaPredicted RBP16.93■□□□□ 0.3
SKA3-202ENST00000314759 GLI2P10070 1586 aa16.93■□□□□ 0.3
SKA3-202ENST00000314759 GGNBP2Q9H3C7 697 aa16.93■□□□□ 0.3
SKA3-202ENST00000314759 SAFB2Q14151 953 aaKnown RBP eCLIP16.92■□□□□ 0.3
SKA3-202ENST00000314759 HSCBQ8IWL3 235 aa16.92■□□□□ 0.3
SKA3-202ENST00000314759 A0A1W2PP64 1363 aa16.92■□□□□ 0.3
SKA3-202ENST00000314759 ABCC11Q96J66 1382 aa16.91■□□□□ 0.3
SKA3-202ENST00000314759 IL16Q14005 1332 aa16.91■□□□□ 0.3
SKA3-202ENST00000314759 PKNOX2Q96KN3 472 aa16.9■□□□□ 0.3
SKA3-202ENST00000314759 COL3A1P02461 1466 aaPredicted RBP16.9■□□□□ 0.3
SKA3-202ENST00000314759 RIPK4P57078 832 aa16.9■□□□□ 0.3
SKA3-202ENST00000314759 ARHGEF28Q8N1W1 1705 aaKnown RBP16.9■□□□□ 0.3
SKA3-202ENST00000314759 DDIT3P35638 169 aa16.9■□□□□ 0.3
SKA3-202ENST00000314759 NUCB1Q02818 461 aa16.9■□□□□ 0.3
SKA3-202ENST00000314759 VGFO15240 615 aaPredicted RBP16.89■□□□□ 0.29
SKA3-202ENST00000314759 RBM25P49756 843 aaKnown RBP16.89■□□□□ 0.29
SKA3-202ENST00000314759 ASXL2Q76L83 1435 aa16.89■□□□□ 0.29
SKA3-202ENST00000314759 VSIG10Q8N0Z9 540 aa16.89■□□□□ 0.29
SKA3-202ENST00000314759 NCOA3Q9Y6Q9 1424 aa16.88■□□□□ 0.29
SKA3-202ENST00000314759 LNPKQ9C0E8 428 aa16.88■□□□□ 0.29
SKA3-202ENST00000314759 ERBB4Q15303 1308 aa16.87■□□□□ 0.29
SKA3-202ENST00000314759 KIF16BQ96L93 1317 aa16.87■□□□□ 0.29
SKA3-202ENST00000314759 FRMPD1Q5SYB0 1578 aa16.87■□□□□ 0.29
SKA3-202ENST00000314759 FYB1O15117 783 aa16.87■□□□□ 0.29
SKA3-202ENST00000314759 IPO8O15397 1037 aaKnown RBP16.87■□□□□ 0.29
SKA3-202ENST00000314759 HSP90AA1P07900 732 aaKnown RBP16.87■□□□□ 0.29
SKA3-202ENST00000314759 SRPK2P78362 688 aaKnown RBP16.87■□□□□ 0.29
SKA3-202ENST00000314759 HSP90AA2PQ14568 343 aaPredicted RBP16.87■□□□□ 0.29
SKA3-202ENST00000314759 DDX11L8A8MPP1 907 aa16.86■□□□□ 0.29
SKA3-202ENST00000314759 SNX21Q969T3 373 aa16.86■□□□□ 0.29
SKA3-202ENST00000314759 MRE11P49959 708 aa16.86■□□□□ 0.29
SKA3-202ENST00000314759 CHD1LQ86WJ1 897 aa16.86■□□□□ 0.29
SKA3-202ENST00000314759 GLIPR1L2Q4G1C9 344 aa16.85■□□□□ 0.29
SKA3-202ENST00000314759 ZMYND15Q9H091 742 aa16.85■□□□□ 0.29
SKA3-202ENST00000314759 GRPEL1Q9HAV7 217 aa16.85■□□□□ 0.29
SKA3-202ENST00000314759 STK26Q9P289 416 aa16.85■□□□□ 0.29
SKA3-202ENST00000314759 ABCC3O15438 1527 aa16.84■□□□□ 0.29
SKA3-202ENST00000314759 CAMSAP1Q5T5Y3 1602 aa16.84■□□□□ 0.29
SKA3-202ENST00000314759 SENP3Q9H4L4 574 aaPredicted RBP16.84■□□□□ 0.29
SKA3-202ENST00000314759 NEXMIFQ5QGS0 1516 aa16.84■□□□□ 0.29
SKA3-202ENST00000314759 ALDH1L2Q3SY69 923 aa16.84■□□□□ 0.29
SKA3-202ENST00000314759 HECW2Q9P2P5 1572 aa16.84■□□□□ 0.29
SKA3-202ENST00000314759 DIAPH1O60610 1272 aaKnown RBP16.83■□□□□ 0.29
SKA3-202ENST00000314759 TNPO1Q92973 898 aaKnown RBP16.83■□□□□ 0.29
SKA3-202ENST00000314759 ESPNB1AK53 854 aa16.83■□□□□ 0.28
SKA3-202ENST00000314759 BMP2KLQ5H9B9 411 aa16.83■□□□□ 0.28
SKA3-202ENST00000314759 KIF2CQ99661 725 aa16.83■□□□□ 0.28
SKA3-202ENST00000314759 SIGLEC1Q9BZZ2 1709 aa16.82■□□□□ 0.28
SKA3-202ENST00000314759 TERF2IPQ9NYB0 399 aa16.82■□□□□ 0.28
SKA3-202ENST00000314759 PNPLA6Q8IY17 1366 aa16.81■□□□□ 0.28
SKA3-202ENST00000314759 POGZQ7Z3K3 1410 aa16.81■□□□□ 0.28
SKA3-202ENST00000314759 RRP9O43818 475 aaKnown RBP16.81■□□□□ 0.28
SKA3-202ENST00000314759 GAS2L3Q86XJ1 694 aa16.81■□□□□ 0.28
SKA3-202ENST00000314759 MLH3Q9UHC1 1453 aa16.81■□□□□ 0.28
SKA3-202ENST00000314759 CD163L1Q9NR16 1453 aa16.81■□□□□ 0.28
SKA3-202ENST00000314759 ZBTB7BO15156 539 aaPredicted RBP16.8■□□□□ 0.28
SKA3-202ENST00000314759 HSP90AB1P08238 724 aaKnown RBP16.8■□□□□ 0.28
SKA3-202ENST00000314759 PIK3C2BO00750 1634 aa16.8■□□□□ 0.28
SKA3-202ENST00000314759 ANKRD45Q5TZF3 282 aa16.8■□□□□ 0.28
SKA3-202ENST00000314759 CIZ1Q9ULV3 898 aaPredicted RBP16.8■□□□□ 0.28
SKA3-202ENST00000314759 MINK1Q8N4C8 1332 aaPredicted RBP16.8■□□□□ 0.28
SKA3-202ENST00000314759 MED14O60244 1454 aa16.8■□□□□ 0.28
SKA3-202ENST00000314759 CD2BP2O95400 341 aaKnown RBP16.8■□□□□ 0.28
SKA3-202ENST00000314759 BRPF1P55201 1214 aaPredicted RBP16.8■□□□□ 0.28
SKA3-202ENST00000314759 IDI1Q13907 227 aa16.8■□□□□ 0.28
SKA3-202ENST00000314759 PPIP5K1Q6PFW1 1433 aa16.79■□□□□ 0.28
SKA3-202ENST00000314759 FCHSD2O94868 740 aa16.79■□□□□ 0.28
SKA3-202ENST00000314759 RAB3GAP1Q15042 981 aa16.79■□□□□ 0.28
SKA3-202ENST00000314759 ATAD2Q6PL18 1390 aa16.79■□□□□ 0.28
SKA3-202ENST00000314759 ISY1Q9ULR0 285 aaKnown RBP16.79■□□□□ 0.28
SKA3-202ENST00000314759 C1orf115Q9H7X2 142 aa16.78■□□□□ 0.28
SKA3-202ENST00000314759 PRAM1Q96QH2 718 aa16.78■□□□□ 0.28
SKA3-202ENST00000314759 PRKAR2BP31323 418 aa16.77■□□□□ 0.28
SKA3-202ENST00000314759 GCC1Q96CN9 775 aa16.77■□□□□ 0.28
SKA3-202ENST00000314759 ZNF428Q96B54 188 aa16.77■□□□□ 0.27
SKA3-202ENST00000314759 GBP4Q96PP9 640 aa16.77■□□□□ 0.27
SKA3-202ENST00000314759 CFAP74Q9C0B2 1584 aa16.76■□□□□ 0.27
SKA3-202ENST00000314759 VAMP4O75379 141 aa16.76■□□□□ 0.27
SKA3-202ENST00000314759 TBC1D9Q6ZT07 1266 aa16.76■□□□□ 0.27
SKA3-202ENST00000314759 PTPRMP28827 1452 aa16.76■□□□□ 0.27
SKA3-202ENST00000314759 FBLN1P23142 703 aa16.76■□□□□ 0.27
SKA3-202ENST00000314759 SIRT2Q8IXJ6 389 aa16.76■□□□□ 0.27
SKA3-202ENST00000314759 FOXD4L1Q9NU39 408 aa16.76■□□□□ 0.27
SKA3-202ENST00000314759 ANKRD26Q9UPS8 1709 aa16.76■□□□□ 0.27
SKA3-202ENST00000314759 MRPL50Q8N5N7 158 aaKnown RBP16.76■□□□□ 0.27
SKA3-202ENST00000314759 RBM42Q9BTD8 480 aaKnown RBP16.76■□□□□ 0.27
SKA3-202ENST00000314759 ZFYVE9O95405 1425 aa16.76■□□□□ 0.27
SKA3-202ENST00000314759 TSPYL6Q8N831 410 aa16.75■□□□□ 0.27
SKA3-202ENST00000314759 THUMPD2Q9BTF0 503 aaKnown RBP16.75■□□□□ 0.27
SKA3-202ENST00000314759 LRRC7Q96NW7 1537 aa16.75■□□□□ 0.27
SKA3-202ENST00000314759 PHACTR3Q96KR7 559 aa16.75■□□□□ 0.27
SKA3-202ENST00000314759 HDGFL2Q7Z4V5 671 aaPredicted RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms