RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 DDX49Q9Y6V7 483 aaKnown RBP15.8■□□□□ 0.12
RETREG3-201ENST00000309428 ERVK-7P63135 1459 aa15.79■□□□□ 0.12
RETREG3-201ENST00000309428 A0A1W2PP64 1363 aa15.79■□□□□ 0.12
RETREG3-201ENST00000309428 ATAD2Q6PL18 1390 aa15.79■□□□□ 0.12
RETREG3-201ENST00000309428 BLMP54132 1417 aaPredicted RBP15.79■□□□□ 0.12
RETREG3-201ENST00000309428 MPNDQ8N594 471 aa15.79■□□□□ 0.12
RETREG3-201ENST00000309428 YEATS2Q9ULM3 1422 aa15.79■□□□□ 0.12
RETREG3-201ENST00000309428 MVPQ14764 893 aaKnown RBP15.79■□□□□ 0.12
RETREG3-201ENST00000309428 PDE3AQ14432 1141 aa15.78■□□□□ 0.12
RETREG3-201ENST00000309428 ABCC1P33527 1531 aa15.78■□□□□ 0.12
RETREG3-201ENST00000309428 KDM2BQ8NHM5 1336 aa15.78■□□□□ 0.12
RETREG3-201ENST00000309428 PRDM15P57071 1507 aaPredicted RBP15.78■□□□□ 0.12
RETREG3-201ENST00000309428 CHMP5Q9NZZ3 219 aa15.78■□□□□ 0.12
RETREG3-201ENST00000309428 XPCQ01831 940 aaPredicted RBP15.77■□□□□ 0.12
RETREG3-201ENST00000309428 ATF7IPQ6VMQ6 1270 aa15.77■□□□□ 0.11
RETREG3-201ENST00000309428 STAC3Q96MF2 364 aa15.77■□□□□ 0.11
RETREG3-201ENST00000309428 ZNF521Q96K83 1311 aa15.77■□□□□ 0.11
RETREG3-201ENST00000309428 CLTCL1P53675 1640 aa15.77■□□□□ 0.11
RETREG3-201ENST00000309428 PTPRTO14522 1441 aa15.76■□□□□ 0.11
RETREG3-201ENST00000309428 IPO8O15397 1037 aaKnown RBP15.76■□□□□ 0.11
RETREG3-201ENST00000309428 RRAGDQ9NQL2 400 aaPredicted RBP15.76■□□□□ 0.11
RETREG3-201ENST00000309428 ZMYM4Q5VZL5 1548 aa15.75■□□□□ 0.11
RETREG3-201ENST00000309428 AMPHP49418 695 aa15.75■□□□□ 0.11
RETREG3-201ENST00000309428 NUDT16Q96DE0 195 aaKnown RBP15.75■□□□□ 0.11
RETREG3-201ENST00000309428 SLC52A1Q9NWF4 448 aa15.75■□□□□ 0.11
RETREG3-201ENST00000309428 MCM4P33991 863 aa15.74■□□□□ 0.11
RETREG3-201ENST00000309428 USHBP1Q8N6Y0 703 aa15.74■□□□□ 0.11
RETREG3-201ENST00000309428 TBC1D2Q9BYX2 928 aa15.74■□□□□ 0.11
RETREG3-201ENST00000309428 TWISTNBQ3B726 338 aaPredicted RBP15.73■□□□□ 0.11
RETREG3-201ENST00000309428 DDX19BQ9UMR2 479 aa15.73■□□□□ 0.11
RETREG3-201ENST00000309428 SMARCA5O60264 1052 aaPredicted RBP15.73■□□□□ 0.11
RETREG3-201ENST00000309428 TSHZ3Q63HK5 1081 aa15.73■□□□□ 0.11
RETREG3-201ENST00000309428 WDR63Q8IWG1 891 aa15.73■□□□□ 0.11
RETREG3-201ENST00000309428 POLKQ9UBT6 870 aa15.73■□□□□ 0.11
RETREG3-201ENST00000309428 TRIM35Q9UPQ4 493 aa15.73■□□□□ 0.11
RETREG3-201ENST00000309428 F6X3S4 739 aa15.72■□□□□ 0.11
RETREG3-201ENST00000309428 FOXO3O43524 673 aa15.72■□□□□ 0.11
RETREG3-201ENST00000309428 EIF2S2P20042 333 aaKnown RBP15.72■□□□□ 0.11
RETREG3-201ENST00000309428 ZFYVE16Q7Z3T8 1539 aa15.72■□□□□ 0.11
RETREG3-201ENST00000309428 CALD1Q05682 793 aaKnown RBP15.72■□□□□ 0.11
RETREG3-201ENST00000309428 HSP90AB2PQ58FF8 381 aa15.72■□□□□ 0.11
RETREG3-201ENST00000309428 RTF1Q92541 710 aaKnown RBP15.72■□□□□ 0.11
RETREG3-201ENST00000309428 E9PCH4 1651 aa15.72■□□□□ 0.11
RETREG3-201ENST00000309428 TAOK2Q9UL54 1235 aa15.72■□□□□ 0.11
RETREG3-201ENST00000309428 ZNF518AQ6AHZ1 1483 aa15.71■□□□□ 0.11
RETREG3-201ENST00000309428 RTEL1-TNFRSF6BF6WH68 1400 aa15.71■□□□□ 0.11
RETREG3-201ENST00000309428 DDX11L8A8MPP1 907 aa15.71■□□□□ 0.11
RETREG3-201ENST00000309428 R3HCC1Q9Y3T6 440 aaKnown RBP15.71■□□□□ 0.11
RETREG3-201ENST00000309428 XRCC6P12956 609 aaKnown RBP eCLIP15.71■□□□□ 0.1
RETREG3-201ENST00000309428 BCL11BQ9C0K0 894 aaPredicted RBP15.71■□□□□ 0.1
RETREG3-201ENST00000309428 ZMYND15Q9H091 742 aa15.71■□□□□ 0.1
RETREG3-201ENST00000309428 PIK3C2GO75747 1445 aa15.7■□□□□ 0.1
RETREG3-201ENST00000309428 C8orf58Q8NAV2 365 aa15.7■□□□□ 0.1
RETREG3-201ENST00000309428 EIF2AK4Q9P2K8 1649 aaKnown RBP15.7■□□□□ 0.1
RETREG3-201ENST00000309428 RNF214Q8ND24 703 aa15.7■□□□□ 0.1
RETREG3-201ENST00000309428 MRE11P49959 708 aa15.7■□□□□ 0.1
RETREG3-201ENST00000309428 ESPNB1AK53 854 aa15.69■□□□□ 0.1
RETREG3-201ENST00000309428 DTNBO60941 627 aa15.69■□□□□ 0.1
RETREG3-201ENST00000309428 RBM42Q9BTD8 480 aaKnown RBP15.69■□□□□ 0.1
RETREG3-201ENST00000309428 C16orf71Q8IYS4 520 aaPredicted RBP15.69■□□□□ 0.1
RETREG3-201ENST00000309428 GRPEL1Q9HAV7 217 aa15.69■□□□□ 0.1
RETREG3-201ENST00000309428 IQGAP3Q86VI3 1631 aa15.68■□□□□ 0.1
RETREG3-201ENST00000309428 NLRP6P59044 892 aa15.68■□□□□ 0.1
RETREG3-201ENST00000309428 MBIPQ9NS73 344 aa15.68■□□□□ 0.1
RETREG3-201ENST00000309428 A0A0G2JS52 829 aa15.67■□□□□ 0.1
RETREG3-201ENST00000309428 A0A0U1RQG5 324 aaPredicted RBP15.67■□□□□ 0.1
RETREG3-201ENST00000309428 CCDC9Q9Y3X0 531 aaKnown RBP15.67■□□□□ 0.1
RETREG3-201ENST00000309428 POLR3AO14802 1390 aaPredicted RBP15.67■□□□□ 0.1
RETREG3-201ENST00000309428 MCTP1Q6DN14 999 aa15.66■□□□□ 0.1
RETREG3-201ENST00000309428 ANKRD36BQ8N2N9 1353 aa15.66■□□□□ 0.1
RETREG3-201ENST00000309428 RPGRIP1LQ68CZ1 1315 aa15.66■□□□□ 0.1
RETREG3-201ENST00000309428 TRPM2O94759 1503 aa15.66■□□□□ 0.1
RETREG3-201ENST00000309428 TRMT2AQ8IZ69 625 aaKnown RBP15.65■□□□□ 0.1
RETREG3-201ENST00000309428 NGEFQ8N5V2 710 aa15.65■□□□□ 0.1
RETREG3-201ENST00000309428 SLC4A2P04920 1241 aa15.65■□□□□ 0.1
RETREG3-201ENST00000309428 UNC13BO14795 1591 aa15.65■□□□□ 0.1
RETREG3-201ENST00000309428 WASLO00401 505 aaPredicted RBP15.64■□□□□ 0.09
RETREG3-201ENST00000309428 NASPP49321 788 aaPredicted RBP15.64■□□□□ 0.09
RETREG3-201ENST00000309428 TSPYL4Q9UJ04 414 aa15.64■□□□□ 0.09
RETREG3-201ENST00000309428 CCDC61Q9Y6R9 512 aa15.64■□□□□ 0.09
RETREG3-201ENST00000309428 TRIM6-TRIM34B2RNG4 842 aa15.64■□□□□ 0.09
RETREG3-201ENST00000309428 NFE2L2Q16236 605 aa15.64■□□□□ 0.09
RETREG3-201ENST00000309428 CAVIN1Q6NZI2 390 aaKnown RBP15.64■□□□□ 0.09
RETREG3-201ENST00000309428 KIAA1211Q6ZU35 1233 aa15.64■□□□□ 0.09
RETREG3-201ENST00000309428 MADDQ8WXG6 1647 aa15.64■□□□□ 0.09
RETREG3-201ENST00000309428 ANXA1P04083 346 aa15.63■□□□□ 0.09
RETREG3-201ENST00000309428 MAP4K4O95819 1239 aaPredicted RBP15.63■□□□□ 0.09
RETREG3-201ENST00000309428 RILPL2Q969X0 211 aa15.63■□□□□ 0.09
RETREG3-201ENST00000309428 FKBP5Q13451 457 aaPredicted RBP15.63■□□□□ 0.09
RETREG3-201ENST00000309428 POLR1AO95602 1720 aaPredicted RBP15.63■□□□□ 0.09
RETREG3-201ENST00000309428 OTUD7AQ8TE49 926 aaPredicted RBP15.62■□□□□ 0.09
RETREG3-201ENST00000309428 GNAI1P63096 354 aa15.62■□□□□ 0.09
RETREG3-201ENST00000309428 KIF16BQ96L93 1317 aa15.62■□□□□ 0.09
RETREG3-201ENST00000309428 EXOC6BQ9Y2D4 811 aa15.62■□□□□ 0.09
RETREG3-201ENST00000309428 FCHSD2O94868 740 aa15.61■□□□□ 0.09
RETREG3-201ENST00000309428 CHD1LQ86WJ1 897 aa15.61■□□□□ 0.09
RETREG3-201ENST00000309428 INSRP06213 1382 aa15.61■□□□□ 0.09
RETREG3-201ENST00000309428 EID1Q9Y6B2 187 aa15.61■□□□□ 0.09
RETREG3-201ENST00000309428 POGZQ7Z3K3 1410 aa15.61■□□□□ 0.09
RETREG3-201ENST00000309428 CASC1Q6TDU7 716 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms