RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 SETD1AO15047 1707 aaKnown RBP16.48■□□□□ 0.23
SNX1-201ENST00000261889 MYOM2P54296 1465 aa16.48■□□□□ 0.23
SNX1-201ENST00000261889 PDE3AQ14432 1141 aa16.48■□□□□ 0.23
SNX1-201ENST00000261889 MAPK8IP3Q9UPT6 1336 aa16.47■□□□□ 0.23
SNX1-201ENST00000261889 INSRP06213 1382 aa16.47■□□□□ 0.23
SNX1-201ENST00000261889 APBB1O00213 710 aa16.47■□□□□ 0.23
SNX1-201ENST00000261889 TPRNQ4KMQ1 711 aa16.47■□□□□ 0.23
SNX1-201ENST00000261889 TRAK2O60296 914 aa16.47■□□□□ 0.23
SNX1-201ENST00000261889 MCM4P33991 863 aa16.47■□□□□ 0.23
SNX1-201ENST00000261889 NLRP1Q9C000 1473 aa16.46■□□□□ 0.22
SNX1-201ENST00000261889 RUNDC1Q96C34 613 aa16.45■□□□□ 0.22
SNX1-201ENST00000261889 TRIM27P14373 513 aa16.45■□□□□ 0.22
SNX1-201ENST00000261889 SSH1Q8WYL5 1049 aa16.45■□□□□ 0.22
SNX1-201ENST00000261889 HSP90AA1P07900 732 aaKnown RBP16.44■□□□□ 0.22
SNX1-201ENST00000261889 CHAMP1Q96JM3 812 aa16.44■□□□□ 0.22
SNX1-201ENST00000261889 NOB1Q9ULX3 412 aaKnown RBP16.44■□□□□ 0.22
SNX1-201ENST00000261889 CD2BP2O95400 341 aaKnown RBP16.44■□□□□ 0.22
SNX1-201ENST00000261889 RWDD1Q9H446 243 aaPredicted RBP16.44■□□□□ 0.22
SNX1-201ENST00000261889 DZIP1LQ8IYY4 767 aaKnown RBP16.44■□□□□ 0.22
SNX1-201ENST00000261889 PMFBP1Q8TBY8 1022 aa16.44■□□□□ 0.22
SNX1-201ENST00000261889 PTPRMP28827 1452 aa16.44■□□□□ 0.22
SNX1-201ENST00000261889 SCAF11Q99590 1463 aaKnown RBP16.43■□□□□ 0.22
SNX1-201ENST00000261889 TMEM57Q8N5G2 664 aa16.43■□□□□ 0.22
SNX1-201ENST00000261889 A2ML1A8K2U0 1454 aa16.43■□□□□ 0.22
SNX1-201ENST00000261889 NRXN3Q9Y4C0 1643 aa16.42■□□□□ 0.22
SNX1-201ENST00000261889 SLIT1O75093 1534 aa16.42■□□□□ 0.22
SNX1-201ENST00000261889 ZFYVE9O95405 1425 aa16.42■□□□□ 0.22
SNX1-201ENST00000261889 MVPQ14764 893 aaKnown RBP16.42■□□□□ 0.22
SNX1-201ENST00000261889 FOXD4L5Q5VV16 416 aaPredicted RBP16.42■□□□□ 0.22
SNX1-201ENST00000261889 FOXD4L4Q8WXT5 416 aaPredicted RBP16.42■□□□□ 0.22
SNX1-201ENST00000261889 PNNQ9H307 717 aaKnown RBP16.42■□□□□ 0.22
SNX1-201ENST00000261889 ERBB4Q15303 1308 aa16.41■□□□□ 0.22
SNX1-201ENST00000261889 ARHGAP23Q9P227 1491 aa16.41■□□□□ 0.22
SNX1-201ENST00000261889 CEP170BQ9Y4F5 1589 aaPredicted RBP16.41■□□□□ 0.22
SNX1-201ENST00000261889 ZKSCAN2Q63HK3 967 aa16.41■□□□□ 0.22
SNX1-201ENST00000261889 GAS2L3Q86XJ1 694 aa16.41■□□□□ 0.22
SNX1-201ENST00000261889 PIK3C2GO75747 1445 aa16.4■□□□□ 0.22
SNX1-201ENST00000261889 UBE2Q2Q8WVN8 375 aa16.4■□□□□ 0.22
SNX1-201ENST00000261889 RSPH6AQ9H0K4 717 aa16.4■□□□□ 0.22
SNX1-201ENST00000261889 ATAD2Q6PL18 1390 aa16.39■□□□□ 0.21
SNX1-201ENST00000261889 SETD1BQ9UPS6 1966 aaKnown RBP16.39■□□□□ 0.21
SNX1-201ENST00000261889 HSCBQ8IWL3 235 aa16.39■□□□□ 0.21
SNX1-201ENST00000261889 HSP90AB1P08238 724 aaKnown RBP16.38■□□□□ 0.21
SNX1-201ENST00000261889 NCLP19338 710 aaKnown RBP16.38■□□□□ 0.21
SNX1-201ENST00000261889 SLC52A1Q9NWF4 448 aa16.38■□□□□ 0.21
SNX1-201ENST00000261889 HMOX1P09601 288 aa16.38■□□□□ 0.21
SNX1-201ENST00000261889 SRPK2P78362 688 aaKnown RBP16.38■□□□□ 0.21
SNX1-201ENST00000261889 VSIG10Q8N0Z9 540 aa16.38■□□□□ 0.21
SNX1-201ENST00000261889 ANKRD45Q5TZF3 282 aa16.38■□□□□ 0.21
SNX1-201ENST00000261889 FBXO31Q5XUX0 539 aaPredicted RBP16.38■□□□□ 0.21
SNX1-201ENST00000261889 IQGAP1P46940 1657 aa16.37■□□□□ 0.21
SNX1-201ENST00000261889 SETBP1Q9Y6X0 1596 aa16.37■□□□□ 0.21
SNX1-201ENST00000261889 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.37■□□□□ 0.21
SNX1-201ENST00000261889 TNRQ92752 1358 aa16.37■□□□□ 0.21
SNX1-201ENST00000261889 L1TD1Q5T7N2 865 aaKnown RBP16.37■□□□□ 0.21
SNX1-201ENST00000261889 MINK1Q8N4C8 1332 aaPredicted RBP16.36■□□□□ 0.21
SNX1-201ENST00000261889 RIPK4P57078 832 aa16.35■□□□□ 0.21
SNX1-201ENST00000261889 MPNDQ8N594 471 aa16.35■□□□□ 0.21
SNX1-201ENST00000261889 TNPO1Q92973 898 aaKnown RBP16.35■□□□□ 0.21
SNX1-201ENST00000261889 FOXD4L6Q3SYB3 417 aaPredicted RBP16.35■□□□□ 0.21
SNX1-201ENST00000261889 FOXD4L3Q6VB84 417 aaPredicted RBP16.35■□□□□ 0.21
SNX1-201ENST00000261889 CFAP53Q96M91 514 aa16.35■□□□□ 0.21
SNX1-201ENST00000261889 CHMP5Q9NZZ3 219 aa16.35■□□□□ 0.21
SNX1-201ENST00000261889 IDI1Q13907 227 aa16.34■□□□□ 0.21
SNX1-201ENST00000261889 ADGRB1O14514 1584 aa16.33■□□□□ 0.21
SNX1-201ENST00000261889 STAC3Q96MF2 364 aa16.33■□□□□ 0.2
SNX1-201ENST00000261889 MYH16Q9H6N6 1097 aa16.33■□□□□ 0.2
SNX1-201ENST00000261889 GRPEL1Q9HAV7 217 aa16.33■□□□□ 0.2
SNX1-201ENST00000261889 SSFA2P28290 1259 aa16.33■□□□□ 0.2
SNX1-201ENST00000261889 MLECQ14165 292 aa16.33■□□□□ 0.2
SNX1-201ENST00000261889 KDM4FA0A1W2PPD8 638 aa16.32■□□□□ 0.2
SNX1-201ENST00000261889 DTNBO60941 627 aa16.32■□□□□ 0.2
SNX1-201ENST00000261889 RPGRIP1LQ68CZ1 1315 aa16.32■□□□□ 0.2
SNX1-201ENST00000261889 TSPYL6Q8N831 410 aa16.31■□□□□ 0.2
SNX1-201ENST00000261889 TMPOP42166 694 aaKnown RBP16.31■□□□□ 0.2
SNX1-201ENST00000261889 ATF7IPQ6VMQ6 1270 aa16.31■□□□□ 0.2
SNX1-201ENST00000261889 NOL8Q76FK4 1167 aaKnown RBP16.31■□□□□ 0.2
SNX1-201ENST00000261889 TRIM35Q9UPQ4 493 aa16.3■□□□□ 0.2
SNX1-201ENST00000261889 KNDC1Q76NI1 1749 aa16.3■□□□□ 0.2
SNX1-201ENST00000261889 MED14O60244 1454 aa16.3■□□□□ 0.2
SNX1-201ENST00000261889 SOX12O15370 315 aa16.3■□□□□ 0.2
SNX1-201ENST00000261889 PKP1Q13835 747 aa16.3■□□□□ 0.2
SNX1-201ENST00000261889 DCTN1Q14203 1278 aa16.3■□□□□ 0.2
SNX1-201ENST00000261889 C16orf71Q8IYS4 520 aaPredicted RBP16.29■□□□□ 0.2
SNX1-201ENST00000261889 TRIM44Q96DX7 344 aaPredicted RBP16.29■□□□□ 0.2
SNX1-201ENST00000261889 MYOM1P52179 1685 aa16.28■□□□□ 0.2
SNX1-201ENST00000261889 FSD2A1L4K1 749 aa16.28■□□□□ 0.2
SNX1-201ENST00000261889 RBM10P98175 930 aaKnown RBP16.28■□□□□ 0.2
SNX1-201ENST00000261889 GAS2L2Q8NHY3 880 aa16.27■□□□□ 0.2
SNX1-201ENST00000261889 POLR3AO14802 1390 aaPredicted RBP16.27■□□□□ 0.2
SNX1-201ENST00000261889 FAM83GA6ND36 823 aa16.27■□□□□ 0.19
SNX1-201ENST00000261889 KRT24Q2M2I5 525 aa16.27■□□□□ 0.19
SNX1-201ENST00000261889 WDR63Q8IWG1 891 aa16.27■□□□□ 0.19
SNX1-201ENST00000261889 OTUD7AQ8TE49 926 aaPredicted RBP16.27■□□□□ 0.19
SNX1-201ENST00000261889 DIP2AQ14689 1571 aa16.26■□□□□ 0.19
SNX1-201ENST00000261889 ZNF692Q9BU19 519 aaPredicted RBP16.26■□□□□ 0.19
SNX1-201ENST00000261889 ESPNB1AK53 854 aa16.26■□□□□ 0.19
SNX1-201ENST00000261889 CEBPAP49715 358 aaPredicted RBP16.26■□□□□ 0.19
SNX1-201ENST00000261889 HSP90AA2PQ14568 343 aaPredicted RBP16.26■□□□□ 0.19
SNX1-201ENST00000261889 ALKQ9UM73 1620 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms