RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 TOPAZ1Q8N9V7 1692 aa17.39■□□□□ 0.37
HIF3A-201ENST00000244302 FMN2Q9NZ56 1722 aa17.39■□□□□ 0.37
HIF3A-201ENST00000244302 SOX12O15370 315 aa17.39■□□□□ 0.37
HIF3A-201ENST00000244302 PLEKHG5O94827 1062 aa17.38■□□□□ 0.37
HIF3A-201ENST00000244302 USP6P35125 1406 aa17.38■□□□□ 0.37
HIF3A-201ENST00000244302 EDC4Q6P2E9 1401 aaKnown RBP17.38■□□□□ 0.37
HIF3A-201ENST00000244302 PAK3O75914 559 aaPredicted RBP17.37■□□□□ 0.37
HIF3A-201ENST00000244302 ADAMTS8Q9UP79 889 aa17.37■□□□□ 0.37
HIF3A-201ENST00000244302 POLR3AO14802 1390 aaPredicted RBP17.36■□□□□ 0.37
HIF3A-201ENST00000244302 ATF3P18847 181 aa17.36■□□□□ 0.37
HIF3A-201ENST00000244302 LRRC7Q96NW7 1537 aa17.36■□□□□ 0.37
HIF3A-201ENST00000244302 SSH2Q76I76 1423 aa17.36■□□□□ 0.37
HIF3A-201ENST00000244302 ANKARQ7Z5J8 1434 aa17.36■□□□□ 0.37
HIF3A-201ENST00000244302 PPM1GO15355 546 aaPredicted RBP17.35■□□□□ 0.37
HIF3A-201ENST00000244302 RRS1Q15050 365 aaKnown RBP17.35■□□□□ 0.37
HIF3A-201ENST00000244302 SALL2Q9Y467 1007 aaPredicted RBP17.35■□□□□ 0.37
HIF3A-201ENST00000244302 AKAP12Q02952 1782 aa17.34■□□□□ 0.37
HIF3A-201ENST00000244302 EMILIN1Q9Y6C2 1016 aa17.34■□□□□ 0.37
HIF3A-201ENST00000244302 PSME1Q06323 249 aa17.33■□□□□ 0.37
HIF3A-201ENST00000244302 C1orf167Q5SNV9 1468 aa17.33■□□□□ 0.37
HIF3A-201ENST00000244302 MON2Q7Z3U7 1717 aa17.33■□□□□ 0.36
HIF3A-201ENST00000244302 NSD2O96028 1365 aa17.33■□□□□ 0.36
HIF3A-201ENST00000244302 XIRP1Q702N8 1843 aaKnown RBP17.33■□□□□ 0.36
HIF3A-201ENST00000244302 COG3Q96JB2 828 aa17.33■□□□□ 0.36
HIF3A-201ENST00000244302 POLKQ9UBT6 870 aa17.33■□□□□ 0.36
HIF3A-201ENST00000244302 ITSN1Q15811 1721 aa17.32■□□□□ 0.36
HIF3A-201ENST00000244302 DMRT2Q9Y5R5 561 aa17.32■□□□□ 0.36
HIF3A-201ENST00000244302 MST1RQ04912 1400 aa17.31■□□□□ 0.36
HIF3A-201ENST00000244302 CCDC146Q8IYE0 955 aa17.31■□□□□ 0.36
HIF3A-201ENST00000244302 ABTB2Q8N961 1025 aa17.3■□□□□ 0.36
HIF3A-201ENST00000244302 NLRP6P59044 892 aa17.3■□□□□ 0.36
HIF3A-201ENST00000244302 CADPS2Q86UW7 1296 aa17.29■□□□□ 0.36
HIF3A-201ENST00000244302 MSH6P52701 1360 aa17.29■□□□□ 0.36
HIF3A-201ENST00000244302 KIF20BQ96Q89 1820 aa17.29■□□□□ 0.36
HIF3A-201ENST00000244302 NRKQ7Z2Y5 1582 aa17.28■□□□□ 0.36
HIF3A-201ENST00000244302 LMOD2Q6P5Q4 547 aa17.28■□□□□ 0.36
HIF3A-201ENST00000244302 WDR43Q15061 677 aaKnown RBP eCLIP17.27■□□□□ 0.35
HIF3A-201ENST00000244302 KRT28Q7Z3Y7 464 aa17.27■□□□□ 0.35
HIF3A-201ENST00000244302 SLAIN2Q9P270 581 aa17.26■□□□□ 0.35
HIF3A-201ENST00000244302 SUPT16HQ9Y5B9 1047 aaKnown RBP17.26■□□□□ 0.35
HIF3A-201ENST00000244302 OVOS2A0A0J9YW53 1432 aa17.25■□□□□ 0.35
HIF3A-201ENST00000244302 OVOS2Q6IE36 1432 aa17.25■□□□□ 0.35
HIF3A-201ENST00000244302 BRINP3Q76B58 766 aa17.25■□□□□ 0.35
HIF3A-201ENST00000244302 NCOA3Q9Y6Q9 1424 aa17.25■□□□□ 0.35
HIF3A-201ENST00000244302 TTC21AQ8NDW8 1320 aa17.25■□□□□ 0.35
HIF3A-201ENST00000244302 AEBP2Q6ZN18 517 aaPredicted RBP17.24■□□□□ 0.35
HIF3A-201ENST00000244302 ANKRD26Q9UPS8 1709 aa17.24■□□□□ 0.35
HIF3A-201ENST00000244302 U2SURPO15042 1029 aaKnown RBP17.23■□□□□ 0.35
HIF3A-201ENST00000244302 PIK3C2AO00443 1686 aa17.23■□□□□ 0.35
HIF3A-201ENST00000244302 MAP2P11137 1827 aaKnown RBP17.23■□□□□ 0.35
HIF3A-201ENST00000244302 HSP90AB2PQ58FF8 381 aa17.23■□□□□ 0.35
HIF3A-201ENST00000244302 U2AF1L5P0DN76 240 aaPredicted RBP17.21■□□□□ 0.35
HIF3A-201ENST00000244302 U2AF1Q01081 240 aaKnown RBP eCLIP17.21■□□□□ 0.35
HIF3A-201ENST00000244302 CFAP53Q96M91 514 aa17.21■□□□□ 0.35
HIF3A-201ENST00000244302 DCCP43146 1447 aa17.21■□□□□ 0.35
HIF3A-201ENST00000244302 MAP3K19Q56UN5 1328 aa17.21■□□□□ 0.35
HIF3A-201ENST00000244302 PNPLA6Q8IY17 1366 aa17.2■□□□□ 0.34
HIF3A-201ENST00000244302 CABLES1Q8TDN4 633 aa17.2■□□□□ 0.34
HIF3A-201ENST00000244302 COL3A1P02461 1466 aaPredicted RBP17.2■□□□□ 0.34
HIF3A-201ENST00000244302 USP31Q70CQ4 1352 aa17.2■□□□□ 0.34
HIF3A-201ENST00000244302 APAF1O14727 1248 aa17.2■□□□□ 0.34
HIF3A-201ENST00000244302 AATKQ6ZMQ8 1374 aa17.19■□□□□ 0.34
HIF3A-201ENST00000244302 SHPRHQ149N8 1683 aa17.19■□□□□ 0.34
HIF3A-201ENST00000244302 ZBTB7CA1YPR0 619 aa17.19■□□□□ 0.34
HIF3A-201ENST00000244302 DIAPH1O60610 1272 aaKnown RBP17.19■□□□□ 0.34
HIF3A-201ENST00000244302 RRP7AQ9Y3A4 280 aaKnown RBP17.19■□□□□ 0.34
HIF3A-201ENST00000244302 LTBP4Q8N2S1 1624 aa17.18■□□□□ 0.34
HIF3A-201ENST00000244302 HMOX1P09601 288 aa17.18■□□□□ 0.34
HIF3A-201ENST00000244302 IL13P35225 146 aa17.18■□□□□ 0.34
HIF3A-201ENST00000244302 ZBED9Q6R2W3 1325 aa17.18■□□□□ 0.34
HIF3A-201ENST00000244302 BLMP54132 1417 aaPredicted RBP17.17■□□□□ 0.34
HIF3A-201ENST00000244302 NEUROD2Q15784 382 aa17.17■□□□□ 0.34
HIF3A-201ENST00000244302 CDCA7LQ96GN5 454 aa17.17■□□□□ 0.34
HIF3A-201ENST00000244302 MARF1Q9Y4F3 1742 aaKnown RBP17.16■□□□□ 0.34
HIF3A-201ENST00000244302 EIF4A2Q14240 407 aaKnown RBP17.15■□□□□ 0.34
HIF3A-201ENST00000244302 PEAK1Q9H792 1746 aa17.15■□□□□ 0.34
HIF3A-201ENST00000244302 GCP02774 474 aa17.14■□□□□ 0.33
HIF3A-201ENST00000244302 LTV1Q96GA3 475 aaPredicted RBP17.14■□□□□ 0.33
HIF3A-201ENST00000244302 AMPHP49418 695 aa17.14■□□□□ 0.33
HIF3A-201ENST00000244302 NPHP3Q7Z494 1330 aa17.14■□□□□ 0.33
HIF3A-201ENST00000244302 AEBP1Q8IUX7 1158 aa17.14■□□□□ 0.33
HIF3A-201ENST00000244302 ZC3H6P61129 1189 aaKnown RBP17.13■□□□□ 0.33
HIF3A-201ENST00000244302 INSRP06213 1382 aa17.12■□□□□ 0.33
HIF3A-201ENST00000244302 PLEKHF1Q96S99 279 aa17.12■□□□□ 0.33
HIF3A-201ENST00000244302 TRPM3Q9HCF6 1732 aaPredicted RBP17.12■□□□□ 0.33
HIF3A-201ENST00000244302 SMG6Q86US8 1419 aaKnown RBP17.12■□□□□ 0.33
HIF3A-201ENST00000244302 TCP11L2Q8N4U5 519 aa17.12■□□□□ 0.33
HIF3A-201ENST00000244302 PHACTR3Q96KR7 559 aa17.12■□□□□ 0.33
HIF3A-201ENST00000244302 NUDCQ9Y266 331 aa17.12■□□□□ 0.33
HIF3A-201ENST00000244302 PXDNQ92626 1479 aa17.12■□□□□ 0.33
HIF3A-201ENST00000244302 HOXC9P31274 260 aa17.11■□□□□ 0.33
HIF3A-201ENST00000244302 SPINK5Q9NQ38 1064 aaPredicted RBP17.11■□□□□ 0.33
HIF3A-201ENST00000244302 SPATA31A3Q5VYP0 1347 aa17.1■□□□□ 0.33
HIF3A-201ENST00000244302 PIP4K2BP78356 416 aa17.1■□□□□ 0.33
HIF3A-201ENST00000244302 RUNDC1Q96C34 613 aa17.1■□□□□ 0.33
HIF3A-201ENST00000244302 AXIN2Q9Y2T1 843 aa17.1■□□□□ 0.33
HIF3A-201ENST00000244302 KIF1AQ12756 1690 aa17.09■□□□□ 0.33
HIF3A-201ENST00000244302 CDK12Q9NYV4 1490 aaPredicted RBP17.09■□□□□ 0.33
HIF3A-201ENST00000244302 PRKAR2BP31323 418 aa17.09■□□□□ 0.33
HIF3A-201ENST00000244302 RSPH6AQ9H0K4 717 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms