RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 ITSN1Q15811 1721 aa10.72□□□□□ -0.69
VAMP3-201ENST00000054666 FER1L4A9Z1Z3 1794 aa10.72□□□□□ -0.69
VAMP3-201ENST00000054666 DIAPH1O60610 1272 aaKnown RBP10.72□□□□□ -0.69
VAMP3-201ENST00000054666 CENPQQ7L2Z9 268 aaPredicted RBP10.71□□□□□ -0.69
VAMP3-201ENST00000054666 C3P01024 1663 aa10.71□□□□□ -0.7
VAMP3-201ENST00000054666 MON2Q7Z3U7 1717 aa10.71□□□□□ -0.7
VAMP3-201ENST00000054666 CPSF1Q10570 1443 aaKnown RBP10.71□□□□□ -0.7
VAMP3-201ENST00000054666 BCAR3O75815 825 aa10.7□□□□□ -0.7
VAMP3-201ENST00000054666 NEFMP07197 916 aa10.7□□□□□ -0.7
VAMP3-201ENST00000054666 ANP32EQ9BTT0 268 aa10.7□□□□□ -0.7
VAMP3-201ENST00000054666 EID1Q9Y6B2 187 aa10.7□□□□□ -0.7
VAMP3-201ENST00000054666 PNPLA6Q8IY17 1366 aa10.7□□□□□ -0.7
VAMP3-201ENST00000054666 ADAMTS13Q76LX8 1427 aa10.7□□□□□ -0.7
VAMP3-201ENST00000054666 MS4A1P11836 297 aa10.7□□□□□ -0.7
VAMP3-201ENST00000054666 ANP32AP39687 249 aaKnown RBP10.7□□□□□ -0.7
VAMP3-201ENST00000054666 NUDT16Q96DE0 195 aaKnown RBP10.7□□□□□ -0.7
VAMP3-201ENST00000054666 CCDC61Q9Y6R9 512 aa10.7□□□□□ -0.7
VAMP3-201ENST00000054666 PDE3AQ14432 1141 aa10.69□□□□□ -0.7
VAMP3-201ENST00000054666 AKAP12Q02952 1782 aa10.69□□□□□ -0.7
VAMP3-201ENST00000054666 KDM2BQ8NHM5 1336 aa10.68□□□□□ -0.7
VAMP3-201ENST00000054666 ROBO2Q9HCK4 1378 aa10.68□□□□□ -0.7
VAMP3-201ENST00000054666 SLIT1O75093 1534 aa10.68□□□□□ -0.7
VAMP3-201ENST00000054666 PPM1GO15355 546 aaPredicted RBP10.68□□□□□ -0.7
VAMP3-201ENST00000054666 TMPOP42166 694 aaKnown RBP10.68□□□□□ -0.7
VAMP3-201ENST00000054666 PLEKHF1Q96S99 279 aa10.68□□□□□ -0.7
VAMP3-201ENST00000054666 CDK12Q9NYV4 1490 aaPredicted RBP10.67□□□□□ -0.7
VAMP3-201ENST00000054666 LRRC7Q96NW7 1537 aa10.67□□□□□ -0.7
VAMP3-201ENST00000054666 CT47B1P0C2W7 299 aaPredicted RBP10.67□□□□□ -0.7
VAMP3-201ENST00000054666 COG3Q96JB2 828 aa10.67□□□□□ -0.7
VAMP3-201ENST00000054666 ZNF692Q9BU19 519 aaPredicted RBP10.67□□□□□ -0.7
VAMP3-201ENST00000054666 DIP2AQ14689 1571 aa10.67□□□□□ -0.7
VAMP3-201ENST00000054666 MAP2P11137 1827 aaKnown RBP10.67□□□□□ -0.7
VAMP3-201ENST00000054666 ARHGAP23Q9P227 1491 aa10.66□□□□□ -0.7
VAMP3-201ENST00000054666 AATKQ6ZMQ8 1374 aa10.66□□□□□ -0.7
VAMP3-201ENST00000054666 CEBPAP49715 358 aaPredicted RBP10.66□□□□□ -0.7
VAMP3-201ENST00000054666 RARSP54136 660 aaKnown RBP10.66□□□□□ -0.7
VAMP3-201ENST00000054666 FRAT1Q92837 279 aaPredicted RBP10.66□□□□□ -0.7
VAMP3-201ENST00000054666 TOPAZ1Q8N9V7 1692 aa10.66□□□□□ -0.7
VAMP3-201ENST00000054666 IL16Q14005 1332 aa10.66□□□□□ -0.7
VAMP3-201ENST00000054666 NME9Q86XW9 330 aa10.66□□□□□ -0.7
VAMP3-201ENST00000054666 POLKQ9UBT6 870 aa10.66□□□□□ -0.7
VAMP3-201ENST00000054666 MSH5O43196 834 aa10.65□□□□□ -0.7
VAMP3-201ENST00000054666 FCHSD2O94868 740 aa10.65□□□□□ -0.7
VAMP3-201ENST00000054666 LTKP29376 864 aa10.65□□□□□ -0.7
VAMP3-201ENST00000054666 PLPPR3Q6T4P5 718 aa10.65□□□□□ -0.7
VAMP3-201ENST00000054666 RIPK4P57078 832 aa10.65□□□□□ -0.71
VAMP3-201ENST00000054666 AAMPQ13685 434 aa10.65□□□□□ -0.71
VAMP3-201ENST00000054666 PTCH1Q13635 1447 aa10.64□□□□□ -0.71
VAMP3-201ENST00000054666 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.64□□□□□ -0.71
VAMP3-201ENST00000054666 TRHP20396 242 aaPredicted RBP10.64□□□□□ -0.71
VAMP3-201ENST00000054666 PDE4AP27815 886 aa10.64□□□□□ -0.71
VAMP3-201ENST00000054666 THEMISQ8N1K5 641 aaPredicted RBP10.64□□□□□ -0.71
VAMP3-201ENST00000054666 NRKQ7Z2Y5 1582 aa10.64□□□□□ -0.71
VAMP3-201ENST00000054666 PRR36Q9H6K5 1346 aa10.64□□□□□ -0.71
VAMP3-201ENST00000054666 PRKAR2BP31323 418 aa10.64□□□□□ -0.71
VAMP3-201ENST00000054666 CLUAP1Q96AJ1 413 aa10.64□□□□□ -0.71
VAMP3-201ENST00000054666 PANK1Q8TE04 598 aa10.63□□□□□ -0.71
VAMP3-201ENST00000054666 SLC26A8Q96RN1 970 aa10.63□□□□□ -0.71
VAMP3-201ENST00000054666 TRIM35Q9UPQ4 493 aa10.63□□□□□ -0.71
VAMP3-201ENST00000054666 COG6Q9Y2V7 657 aa10.63□□□□□ -0.71
VAMP3-201ENST00000054666 EMILIN1Q9Y6C2 1016 aa10.63□□□□□ -0.71
VAMP3-201ENST00000054666 NCKAP5LQ9HCH0 1330 aa10.63□□□□□ -0.71
VAMP3-201ENST00000054666 BCL2L13Q9BXK5 485 aa10.62□□□□□ -0.71
VAMP3-201ENST00000054666 BACH2Q9BYV9 841 aa10.62□□□□□ -0.71
VAMP3-201ENST00000054666 RSPH6AQ9H0K4 717 aa10.62□□□□□ -0.71
VAMP3-201ENST00000054666 CALD1Q05682 793 aaKnown RBP10.62□□□□□ -0.71
VAMP3-201ENST00000054666 FTSJ3Q8IY81 847 aaKnown RBP10.62□□□□□ -0.71
VAMP3-201ENST00000054666 PTPRUQ92729 1446 aa10.62□□□□□ -0.71
VAMP3-201ENST00000054666 TSR2Q969E8 191 aaKnown RBP10.62□□□□□ -0.71
VAMP3-201ENST00000054666 TBX22Q9Y458 520 aa10.62□□□□□ -0.71
VAMP3-201ENST00000054666 SMC4Q9NTJ3 1288 aa10.61□□□□□ -0.71
VAMP3-201ENST00000054666 USP6P35125 1406 aa10.61□□□□□ -0.71
VAMP3-201ENST00000054666 EXOSC9Q06265 439 aaKnown RBP10.61□□□□□ -0.71
VAMP3-201ENST00000054666 ZKSCAN2Q63HK3 967 aa10.61□□□□□ -0.71
VAMP3-201ENST00000054666 AMOTL2Q9Y2J4 779 aa10.61□□□□□ -0.71
VAMP3-201ENST00000054666 NOP58Q9Y2X3 529 aaKnown RBP10.61□□□□□ -0.71
VAMP3-201ENST00000054666 CEP170BQ9Y4F5 1589 aaPredicted RBP10.6□□□□□ -0.71
VAMP3-201ENST00000054666 ACEP12821 1306 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 TTC21BQ7Z4L5 1316 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 PLEKHG3A1L390 1219 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 FBLN1P23142 703 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 NFE2L2Q16236 605 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 PMFBP1Q8TBY8 1022 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 IPO9Q96P70 1041 aaKnown RBP10.6□□□□□ -0.71
VAMP3-201ENST00000054666 ZRANB1Q9UGI0 708 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 OVOS2A0A0J9YW53 1432 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 OVOS2Q6IE36 1432 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 HMOX1P09601 288 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 IL13P35225 146 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 LMOD3Q0VAK6 560 aa10.6□□□□□ -0.71
VAMP3-201ENST00000054666 RRS1Q15050 365 aaKnown RBP10.6□□□□□ -0.71
VAMP3-201ENST00000054666 NPM2Q86SE8 214 aaKnown RBP10.6□□□□□ -0.71
VAMP3-201ENST00000054666 XRN1Q8IZH2 1706 aaKnown RBP10.59□□□□□ -0.71
VAMP3-201ENST00000054666 NUTM2FA1L443 756 aa10.59□□□□□ -0.71
VAMP3-201ENST00000054666 KIF16BQ96L93 1317 aa10.59□□□□□ -0.71
VAMP3-201ENST00000054666 RIMS1Q86UR5 1692 aaKnown RBP10.59□□□□□ -0.71
VAMP3-201ENST00000054666 NALCNQ8IZF0 1738 aa10.58□□□□□ -0.72
VAMP3-201ENST00000054666 RGS3P49796 1198 aa10.58□□□□□ -0.72
VAMP3-201ENST00000054666 MVPQ14764 893 aaKnown RBP10.58□□□□□ -0.72
VAMP3-201ENST00000054666 SKAP1Q86WV1 359 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms