RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 SMC5Q8IY18 1101 aa17.69■□□□□ 0.42
USH1C-201ENST00000005226 C1orf115Q9H7X2 142 aa17.69■□□□□ 0.42
USH1C-201ENST00000005226 ZBTB40Q9NUA8 1239 aa17.69■□□□□ 0.42
USH1C-201ENST00000005226 FYB1O15117 783 aa17.69■□□□□ 0.42
USH1C-201ENST00000005226 ZC3H13Q5T200 1668 aaKnown RBP17.68■□□□□ 0.42
USH1C-201ENST00000005226 HSCBQ8IWL3 235 aa17.68■□□□□ 0.42
USH1C-201ENST00000005226 THUMPD2Q9BTF0 503 aaKnown RBP17.68■□□□□ 0.42
USH1C-201ENST00000005226 ZMYM3Q14202 1370 aa17.67■□□□□ 0.42
USH1C-201ENST00000005226 ASXL2Q76L83 1435 aa17.67■□□□□ 0.42
USH1C-201ENST00000005226 FSD2A1L4K1 749 aa17.66■□□□□ 0.42
USH1C-201ENST00000005226 ELL2O00472 640 aaPredicted RBP17.66■□□□□ 0.42
USH1C-201ENST00000005226 VGFO15240 615 aaPredicted RBP17.66■□□□□ 0.42
USH1C-201ENST00000005226 PPLO60437 1756 aa17.66■□□□□ 0.42
USH1C-201ENST00000005226 ZNF692Q9BU19 519 aaPredicted RBP17.66■□□□□ 0.42
USH1C-201ENST00000005226 RSPH6AQ9H0K4 717 aa17.65■□□□□ 0.42
USH1C-201ENST00000005226 CT47B1P0C2W7 299 aaPredicted RBP17.65■□□□□ 0.42
USH1C-201ENST00000005226 IDI1Q13907 227 aa17.65■□□□□ 0.42
USH1C-201ENST00000005226 RPGRIP1LQ68CZ1 1315 aa17.64■□□□□ 0.42
USH1C-201ENST00000005226 DIAPH1O60610 1272 aaKnown RBP17.64■□□□□ 0.41
USH1C-201ENST00000005226 RAPGEF3O95398 923 aa17.64■□□□□ 0.41
USH1C-201ENST00000005226 NUCB1Q02818 461 aa17.64■□□□□ 0.41
USH1C-201ENST00000005226 ANKRD45Q5TZF3 282 aa17.64■□□□□ 0.41
USH1C-201ENST00000005226 GLI2P10070 1586 aa17.64■□□□□ 0.41
USH1C-201ENST00000005226 CHD1LQ86WJ1 897 aa17.63■□□□□ 0.41
USH1C-201ENST00000005226 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.63■□□□□ 0.41
USH1C-201ENST00000005226 PRAM1Q96QH2 718 aa17.63■□□□□ 0.41
USH1C-201ENST00000005226 RBM42Q9BTD8 480 aaKnown RBP17.63■□□□□ 0.41
USH1C-201ENST00000005226 ADGRB2O60241 1585 aa17.63■□□□□ 0.41
USH1C-201ENST00000005226 CD2BP2O95400 341 aaKnown RBP17.63■□□□□ 0.41
USH1C-201ENST00000005226 NSD2O96028 1365 aa17.62■□□□□ 0.41
USH1C-201ENST00000005226 LMTK2Q8IWU2 1503 aa17.62■□□□□ 0.41
USH1C-201ENST00000005226 HMOX1P09601 288 aa17.62■□□□□ 0.41
USH1C-201ENST00000005226 ABCC11Q96J66 1382 aa17.61■□□□□ 0.41
USH1C-201ENST00000005226 IPO8O15397 1037 aaKnown RBP17.61■□□□□ 0.41
USH1C-201ENST00000005226 PRKAR2BP31323 418 aa17.61■□□□□ 0.41
USH1C-201ENST00000005226 TSPYL6Q8N831 410 aa17.61■□□□□ 0.41
USH1C-201ENST00000005226 USP32Q8NFA0 1604 aa17.61■□□□□ 0.41
USH1C-201ENST00000005226 NCBP3Q53F19 620 aaKnown RBP17.61■□□□□ 0.41
USH1C-201ENST00000005226 TNPO1Q92973 898 aaKnown RBP17.61■□□□□ 0.41
USH1C-201ENST00000005226 PHACTR3Q96KR7 559 aa17.61■□□□□ 0.41
USH1C-201ENST00000005226 HSP90AB1P08238 724 aaKnown RBP17.6■□□□□ 0.41
USH1C-201ENST00000005226 CABP1Q9NZU7 370 aa17.6■□□□□ 0.41
USH1C-201ENST00000005226 PUS7Q96PZ0 661 aaKnown RBP17.59■□□□□ 0.41
USH1C-201ENST00000005226 RBM25P49756 843 aaKnown RBP17.59■□□□□ 0.41
USH1C-201ENST00000005226 TERF2IPQ9NYB0 399 aa17.59■□□□□ 0.41
USH1C-201ENST00000005226 COL3A1P02461 1466 aaPredicted RBP17.59■□□□□ 0.41
USH1C-201ENST00000005226 KIF2CQ99661 725 aa17.58■□□□□ 0.41
USH1C-201ENST00000005226 KIF16BQ96L93 1317 aa17.58■□□□□ 0.41
USH1C-201ENST00000005226 CAMSAP1Q5T5Y3 1602 aa17.58■□□□□ 0.4
USH1C-201ENST00000005226 FRMPD1Q5SYB0 1578 aa17.58■□□□□ 0.4
USH1C-201ENST00000005226 DDIT3P35638 169 aa17.57■□□□□ 0.4
USH1C-201ENST00000005226 GAS2L3Q86XJ1 694 aa17.57■□□□□ 0.4
USH1C-201ENST00000005226 IL16Q14005 1332 aa17.57■□□□□ 0.4
USH1C-201ENST00000005226 ARHGEF28Q8N1W1 1705 aaKnown RBP17.57■□□□□ 0.4
USH1C-201ENST00000005226 ZBTB7BO15156 539 aaPredicted RBP17.57■□□□□ 0.4
USH1C-201ENST00000005226 GRPEL1Q9HAV7 217 aa17.57■□□□□ 0.4
USH1C-201ENST00000005226 CDK19Q9BWU1 502 aa17.56■□□□□ 0.4
USH1C-201ENST00000005226 HSP90AA1P07900 732 aaKnown RBP17.56■□□□□ 0.4
USH1C-201ENST00000005226 SIRT2Q8IXJ6 389 aa17.56■□□□□ 0.4
USH1C-201ENST00000005226 NAP1L5Q96NT1 182 aaPredicted RBP17.56■□□□□ 0.4
USH1C-201ENST00000005226 PPIP5K1Q6PFW1 1433 aa17.55■□□□□ 0.4
USH1C-201ENST00000005226 VAMP4O75379 141 aa17.55■□□□□ 0.4
USH1C-201ENST00000005226 MRE11P49959 708 aa17.55■□□□□ 0.4
USH1C-201ENST00000005226 TBC1D9Q6ZT07 1266 aa17.55■□□□□ 0.4
USH1C-201ENST00000005226 ABCC3O15438 1527 aa17.55■□□□□ 0.4
USH1C-201ENST00000005226 SIGLEC1Q9BZZ2 1709 aa17.55■□□□□ 0.4
USH1C-201ENST00000005226 DDX11L8A8MPP1 907 aa17.55■□□□□ 0.4
USH1C-201ENST00000005226 NPM1P06748 294 aaKnown RBP eCLIP17.55■□□□□ 0.4
USH1C-201ENST00000005226 ATAD2Q6PL18 1390 aa17.55■□□□□ 0.4
USH1C-201ENST00000005226 MRPL50Q8N5N7 158 aaKnown RBP17.54■□□□□ 0.4
USH1C-201ENST00000005226 NEXMIFQ5QGS0 1516 aa17.54■□□□□ 0.4
USH1C-201ENST00000005226 ALDH1L2Q3SY69 923 aa17.54■□□□□ 0.4
USH1C-201ENST00000005226 HDGFL2Q7Z4V5 671 aaPredicted RBP17.54■□□□□ 0.4
USH1C-201ENST00000005226 SNX21Q969T3 373 aa17.54■□□□□ 0.4
USH1C-201ENST00000005226 POLKQ9UBT6 870 aa17.54■□□□□ 0.4
USH1C-201ENST00000005226 BMP2KLQ5H9B9 411 aa17.53■□□□□ 0.4
USH1C-201ENST00000005226 CD163L1Q9NR16 1453 aa17.53■□□□□ 0.4
USH1C-201ENST00000005226 FCHSD2O94868 740 aa17.53■□□□□ 0.4
USH1C-201ENST00000005226 PNNQ9H307 717 aaKnown RBP17.53■□□□□ 0.4
USH1C-201ENST00000005226 ZRANB1Q9UGI0 708 aa17.53■□□□□ 0.4
USH1C-201ENST00000005226 POGZQ7Z3K3 1410 aa17.52■□□□□ 0.4
USH1C-201ENST00000005226 SSFA2P28290 1259 aa17.52■□□□□ 0.39
USH1C-201ENST00000005226 FBXO31Q5XUX0 539 aaPredicted RBP17.52■□□□□ 0.39
USH1C-201ENST00000005226 WAPLQ7Z5K2 1190 aa17.52■□□□□ 0.39
USH1C-201ENST00000005226 EMILIN1Q9Y6C2 1016 aa17.52■□□□□ 0.39
USH1C-201ENST00000005226 NCOA3Q9Y6Q9 1424 aa17.52■□□□□ 0.39
USH1C-201ENST00000005226 ERBB4Q15303 1308 aa17.51■□□□□ 0.39
USH1C-201ENST00000005226 GAS2L2Q8NHY3 880 aa17.51■□□□□ 0.39
USH1C-201ENST00000005226 FAM83GA6ND36 823 aa17.51■□□□□ 0.39
USH1C-201ENST00000005226 DCTN1Q14203 1278 aa17.51■□□□□ 0.39
USH1C-201ENST00000005226 RAB3GAP1Q15042 981 aa17.5■□□□□ 0.39
USH1C-201ENST00000005226 C16orf71Q8IYS4 520 aaPredicted RBP17.5■□□□□ 0.39
USH1C-201ENST00000005226 C8orf58Q8NAV2 365 aa17.5■□□□□ 0.39
USH1C-201ENST00000005226 MBIPQ9NS73 344 aa17.5■□□□□ 0.39
USH1C-201ENST00000005226 CLCN1P35523 988 aa17.49■□□□□ 0.39
USH1C-201ENST00000005226 NFE2L2Q16236 605 aa17.49■□□□□ 0.39
USH1C-201ENST00000005226 HECW2Q9P2P5 1572 aa17.49■□□□□ 0.39
USH1C-201ENST00000005226 PNPLA6Q8IY17 1366 aa17.48■□□□□ 0.39
USH1C-201ENST00000005226 UBE2Q2Q8WVN8 375 aa17.48■□□□□ 0.39
USH1C-201ENST00000005226 GCC1Q96CN9 775 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms