RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 LOC105371045A0A1W2PR82 267 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 H3BML4 177 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 EYA2O00167 538 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 TPP1O14773 563 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 TBX3O15119 743 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 RGS10O43665 173 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 RRP9O43818 475 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 FGF17O60258 216 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 DTNBO60941 627 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 RFPL1O75677 317 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 SLC22A3O75751 556 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 ALDH1L1O75891 902 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 TUSC2O75896 110 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 RASAL1O95294 804 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 LCKP06239 509 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 PDGFRBP09619 1106 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 KRTAP1-4P0C5Y4 121 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 PF4V1P10720 104 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 IL1R1P14778 569 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 CHRNB2P17787 502 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 MATN1P21941 496 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 AKAP5P24588 427 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 NDUFS1P28331 727 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 RAB27AP51159 221 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 HNRNPA3P51991 378 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 DGKQP52824 942 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 NUDT6P53370 316 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 COPAP53621 1224 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 RAB1AP62820 205 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 DLG1Q12959 904 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 MTAPQ13126 283 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 KCNC3Q14003 757 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 HNF4GQ14541 408 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 TTF1Q15361 905 aaPredicted RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 PLEKHG6Q3KR16 790 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 ANXA2RQ3ZCQ2 193 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 RNF187Q5TA31 235 aaPredicted RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 ZDHHC20Q5W0Z9 365 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 APOA5Q6Q788 366 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 DHRS13Q6UX07 377 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 ZDHHC24Q6UX98 284 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 STXBP4Q6ZWJ1 553 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 TUBA1AQ71U36 451 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 RSRC2Q7L4I2 434 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 EPM2AIP1Q7L775 607 aaPredicted RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 ZBTB46Q86UZ6 589 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 MICU3Q86XE3 530 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 CAMK1DQ8IU85 385 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 LAS2Q8IYD9 372 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 KIAA0319LQ8IZA0 1049 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 FAM177A1Q8N128 213 aaPredicted RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 C11orf44Q8N8P7 122 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 AMER3Q8N944 861 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 ZNF114Q8NC26 417 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 CADM4Q8NFZ8 388 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 OR52N4Q8NGI2 321 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 GRAPLQ8TC17 118 aaPredicted RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 KBTBD7Q8WVZ9 684 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 ASB12Q8WXK4 309 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 ZNF501Q96CX3 271 aaPredicted RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 LGALS12Q96DT0 336 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 HSPBAP1Q96EW2 488 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 SLC35A4Q96G79 324 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 FEM1CQ96JP0 617 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 AIFM3Q96NN9 605 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 NT5C1BQ96P26 610 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 HIST1H2AAQ96QV6 131 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 P2RX7Q99572 595 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 CGRRF1Q99675 332 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 TUBA1CQ9BQE3 449 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 C22orf23Q9BZE7 217 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 TRIM2Q9C040 744 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 DHX36Q9H2U1 1008 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 ZMAT3Q9HA38 289 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 ZNF334Q9HCZ1 680 aaPredicted RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 HOMER2Q9NSB8 354 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 RXFP3Q9NSD7 469 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 RNF146Q9NTX7 359 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 PIH1D1Q9NWS0 290 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 STK32BQ9NY57 414 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 DDX56Q9NY93 547 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 PAK5Q9P286 719 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 DDX20Q9UHI6 824 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 AGO1Q9UL18 857 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 PNMA8BQ9ULN7 279 aaPredicted RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 STXBP5LQ9Y2K9 1186 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 SLC27A6Q9Y2P4 619 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 NOP58Q9Y2X3 529 aaKnown RBP0.6□□□□□ -2.31
VPS35-212ENST00000640313 RAI2Q9Y5P3 530 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 MRFAP1Q9Y605 127 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 A0A087WZ62 844 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 A0A088AWK7 358 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 LOC102723971A0A1B0GUV8 181 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 E2F8A0AVK6 867 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ANKRD62A6NC57 917 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 TRIM43BA6NCK2 446 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 MBD3L4A6NDZ8 208 aaPredicted RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 MBD3L3A6NE82 208 aaPredicted RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 TMEM233B4DJY2 109 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 BTN3A1O00481 513 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms