RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZNF567Q8N184 647 aa17.32■□□□□ 0.36
CLN3-252ENST00000636907 LZTR1Q8N653 840 aa17.32■□□□□ 0.36
CLN3-252ENST00000636907 MRPL43Q8N983 215 aaKnown RBP17.32■□□□□ 0.36
CLN3-252ENST00000636907 KREMEN2Q8NCW0 462 aa17.32■□□□□ 0.36
CLN3-252ENST00000636907 IGSF8Q969P0 613 aa17.32■□□□□ 0.36
CLN3-252ENST00000636907 ZYG11BQ9C0D3 744 aa17.32■□□□□ 0.36
CLN3-252ENST00000636907 RNF38Q9H0F5 515 aa17.32■□□□□ 0.36
CLN3-252ENST00000636907 IL21Q9HBE4 155 aa17.32■□□□□ 0.36
CLN3-252ENST00000636907 PPARGC1AQ9UBK2 798 aaKnown RBP17.32■□□□□ 0.36
CLN3-252ENST00000636907 IGLV3-10A0A075B6K4 115 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 GOLGA8KD6RF30 607 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 ALOX15BO15296 676 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 POLR3GO15318 223 aaPredicted RBP17.31■□□□□ 0.36
CLN3-252ENST00000636907 ZNF189O75820 626 aaPredicted RBP17.31■□□□□ 0.36
CLN3-252ENST00000636907 CNTN5O94779 1100 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 LRG1P02750 347 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 PTPN3P26045 913 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 IFFO1Q0D2I5 559 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 MTA1Q13330 715 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 MSS51Q4VC12 460 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 ALFQ53S48 1182 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 TTMPQ5BVD1 217 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 HP1BP3Q5SSJ5 553 aaPredicted RBP17.31■□□□□ 0.36
CLN3-252ENST00000636907 FAM109BQ6ICB4 259 aaPredicted RBP17.31■□□□□ 0.36
CLN3-252ENST00000636907 ARHGAP36Q6ZRI8 547 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 CCDC149Q6ZUS6 474 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 CHSY1Q86X52 802 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 CCDC13Q8IYE1 715 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 ZBED8Q8IZ13 594 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 EXOC4Q96A65 974 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 PHACTR1Q9C0D0 580 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 SLC39A8Q9C0K1 460 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 TMBIM4Q9HC24 238 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 TLR9Q9NR96 1032 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 ASB3Q9Y575 518 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 ANAPC1Q9H1A4 1944 aa17.31■□□□□ 0.36
CLN3-252ENST00000636907 DRGXA6NNA5 263 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 E7ESA3 106 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 C5orf67F2Z3F1 127 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 F5H423 210 aaPredicted RBP17.3■□□□□ 0.36
CLN3-252ENST00000636907 ACSL4O60488 711 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 GLUD1P00367 558 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 APRTP07741 180 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 RHOQP17081 205 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 TACR2P21452 398 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 COG7P83436 770 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 SEMA5AQ13591 1074 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 ACBD5Q5T8D3 534 aaPredicted RBP17.3■□□□□ 0.36
CLN3-252ENST00000636907 AFMIDQ63HM1 303 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 TFAP2DQ7Z6R9 452 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 PLD4Q96BZ4 506 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 MYEOVQ96EZ4 313 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 GKN1Q9NS71 199 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 TMEM248Q9NWD8 314 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 NUP205Q92621 2012 aa17.3■□□□□ 0.36
CLN3-252ENST00000636907 LAMA2P24043 3122 aaKnown RBP17.3■□□□□ 0.36
CLN3-252ENST00000636907 EIF3HO15372 352 aaKnown RBP eCLIP17.29■□□□□ 0.36
CLN3-252ENST00000636907 MYZAPP0CAP1 466 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 FDFT1P37268 417 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 HARS2P49590 506 aaKnown RBP17.29■□□□□ 0.36
CLN3-252ENST00000636907 UBE3AQ05086 875 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 ZBTB17Q13105 803 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 MTM1Q13496 603 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 PPP1R21Q6ZMI0 780 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 HS6ST3Q8IZP7 471 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 PDIK1LQ8N165 341 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 ATPAF2Q8N5M1 289 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 RPRD1AQ96P16 312 aaPredicted RBP17.29■□□□□ 0.36
CLN3-252ENST00000636907 TSGA13Q96PP4 275 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 KLF16Q9BXK1 252 aaPredicted RBP17.29■□□□□ 0.36
CLN3-252ENST00000636907 NOL6Q9H6R4 1146 aaKnown RBP17.29■□□□□ 0.36
CLN3-252ENST00000636907 TRPC7Q9HCX4 862 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 VPS18Q9P253 973 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 KLHL8Q9P2G9 620 aaPredicted RBP17.29■□□□□ 0.36
CLN3-252ENST00000636907 OBSL1O75147 1896 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 DOCK4Q8N1I0 1966 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 GOLGA6L10A6NI86 522 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 GRM6O15303 877 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 MTSS1O43312 755 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 STC2O76061 302 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 KLKB1P03952 638 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 TPSB2P20231 275 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 PSMB4P28070 264 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 GABRR2P28476 465 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 SLC6A4P31645 630 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 IRS1P35568 1242 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 CLCN4P51793 760 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 ZNF33AQ06730 810 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 CAMK1Q14012 370 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 TPSAB1Q15661 275 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 KRT71Q3SY84 523 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 BBS9Q3SYG4 887 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 FAM133BQ5BKY9 247 aaKnown RBP17.29■□□□□ 0.36
CLN3-252ENST00000636907 PID1Q7Z2X4 250 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 TMC8Q8IU68 726 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 ANKMY2Q8IV38 441 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 DENND1CQ8IV53 801 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 UMODL1-AS1Q8N2C9 162 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 MICAL1Q8TDZ2 1067 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 WBP2Q969T9 261 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms