RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 LIASO43766 372 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 IGSF3O75054 1194 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 NEURL1O76050 574 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 VIPP01282 170 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 LCKP06239 509 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 SRGAP2BP0DMP2 458 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 SELENOVP59797 346 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 ZP1P60852 638 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 SEC61A1P61619 476 aaKnown RBP3.27□□□□□ -1.89
SCN1A-208ENST00000625916 SHC2P98077 582 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 ZNF672Q499Z4 452 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-208ENST00000625916 ARHGAP15Q53QZ3 475 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 FSCBQ5H9T9 825 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 RAP1GAP2Q684P5 730 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 CHST15Q7LFX5 561 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-208ENST00000625916 TTC30AQ86WT1 665 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 FAM217AQ8IXS0 508 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 SLC25A41Q8N5S1 370 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 MAGEB6Q8N7X4 407 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 ATP11CQ8NB49 1132 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 NPIPB3Q92617 1050 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 FAR2Q96K12 515 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 WDR77Q9BQA1 342 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-208ENST00000625916 NUDT22Q9BRQ3 303 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 APOL5Q9BWW9 433 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 POLDIP3Q9BY77 421 aaKnown RBP3.27□□□□□ -1.89
SCN1A-208ENST00000625916 PCDHAC1Q9H158 963 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 NUP62CLQ9H1M0 184 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 SFXN1Q9H9B4 322 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 MAGED2Q9UNF1 606 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-208ENST00000625916 LMTK3Q96Q04 1460 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 LOC102724159A0A0B4J2E5 919 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 ANKRD62A6NC57 917 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 VWA5AO00534 786 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 KIF3BO15066 747 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 SLC16A5O15375 505 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 SCGB1D2O95969 90 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 ALDOCP09972 364 aaKnown RBP3.26□□□□□ -1.89
SCN1A-208ENST00000625916 MYL4P12829 197 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 SLC16A2P36021 539 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 PMS2P54278 862 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 POLE2P56282 527 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 POU5F1BQ06416 359 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 SEMA5AQ13591 1074 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 SLC39A14Q15043 492 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 PLCB4Q15147 1175 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 PWP2Q15269 919 aaKnown RBP3.26□□□□□ -1.89
SCN1A-208ENST00000625916 HLFQ16534 295 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 KRTAP24-1Q3LI83 254 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 TDRD12Q587J7 1177 aaKnown RBP3.26□□□□□ -1.89
SCN1A-208ENST00000625916 ODR4Q5SWX8 454 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 KLHDC7AQ5VTJ3 777 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 NXNQ6DKJ4 435 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 KIAA0408Q6ZU52 694 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 FJX1Q86VR8 437 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 TCEAL8Q8IYN2 117 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 ADGRF3Q8IZF5 1079 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 ADAD1Q96M93 576 aaKnown RBP3.26□□□□□ -1.89
SCN1A-208ENST00000625916 DUX5Q96PT3 197 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 OSBPL5Q9H0X9 879 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-208ENST00000625916 IL21RQ9HBE5 538 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 PNRC2Q9NPJ4 139 aaKnown RBP3.26□□□□□ -1.89
SCN1A-208ENST00000625916 TCF7L2Q9NQB0 619 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 RNF146Q9NTX7 359 aa3.26□□□□□ -1.89
SCN1A-208ENST00000625916 FRMPD2Q68DX3 1309 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-208ENST00000625916 OR2W5A6NFC9 320 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 SAC3D1A6NKF1 404 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 RHPN2P1A8MT19 583 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 MS4A18H0YCH9 400 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 I6L893 689 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-208ENST00000625916 UMODP07911 640 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 PECAM1P16284 738 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-208ENST00000625916 CHRNB2P17787 502 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 CHRNA5P30532 468 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 IGBP1P78318 339 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 CSHL1Q14406 222 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 GRM3Q14832 879 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 PPP2R5AQ15172 486 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 MRGPRG-AS1Q2M3A8 158 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 SLC5A9Q2M3M2 681 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 WBP2NLQ6ICG8 309 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 BEND5Q7L4P6 421 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 ZNF367Q7RTV3 350 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 RAVER1Q8IY67 606 aaKnown RBP3.25□□□□□ -1.89
SCN1A-208ENST00000625916 FAM185AQ8N0U4 392 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 CLIP4Q8N3C7 705 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 CCDC33Q8N5R6 958 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 OR14A16Q8NHC5 309 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 TMED6Q8WW62 240 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 IP6K1Q92551 441 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 PHKBQ93100 1093 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 HES6Q96HZ4 224 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 SNX27Q96L92 541 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 B3GNT4Q9C0J1 378 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 PRDM11Q9NQV5 511 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 DTX4Q9Y2E6 619 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 DOCK7Q96N67 2140 aa3.25□□□□□ -1.89
SCN1A-208ENST00000625916 BUB3O43684 328 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 KRT36O76013 467 aa3.24□□□□□ -1.89
SCN1A-208ENST00000625916 ALDOAP04075 364 aaKnown RBP3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms