RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SLC41A1Q8IVJ1 513 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 RGL4Q8IZJ4 473 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 CCAR2Q8N163 923 aaKnown RBP15.76■□□□□ 0.11
TRIM28-203ENST00000593582 KDM1BQ8NB78 822 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 NT5C3BQ969T7 300 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 PGAP3Q96FM1 320 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-203ENST00000593582 BPIFA3Q9BQP9 254 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 TKTL2Q9H0I9 626 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 SIK2Q9H0K1 926 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 HSD3B7Q9H2F3 369 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 TMEM9BQ9NQ34 198 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 PRSS16Q9NQE7 514 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 WSB2Q9NYS7 404 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-203ENST00000593582 VANGL2Q9ULK5 521 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 HS3ST4Q9Y661 456 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 C4orf47A7E2U8 309 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 SMTNL1A8MU46 457 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 CYP1A1P04798 512 aaPredicted RBP15.75■□□□□ 0.11
TRIM28-203ENST00000593582 SRPRAP08240 638 aaKnown RBP15.75■□□□□ 0.11
TRIM28-203ENST00000593582 CHRNB2P17787 502 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 MMP8P22894 467 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 FMO1Q01740 532 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 ZBTB16Q05516 673 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 SULT2A1Q06520 285 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 DUOXA1Q1HG43 343 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 HNRNPA1L2Q32P51 320 aaKnown RBP15.75■□□□□ 0.11
TRIM28-203ENST00000593582 PLEKHG6Q3KR16 790 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 PPM1JQ5JR12 505 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 WDR45BQ5MNZ6 344 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 OTUD1Q5VV17 481 aaPredicted RBP15.75■□□□□ 0.11
TRIM28-203ENST00000593582 DAB2IPQ5VWQ8 1189 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 CADM4Q8NFZ8 388 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 IGSF8Q969P0 613 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 PPP1R9BQ96SB3 815 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 TBCBQ99426 244 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 GPR174Q9BXC1 333 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 ADAM33Q9BZ11 813 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 ARHGEF38Q9NXL2 777 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 ERVW-1Q9UQF0 538 aa15.75■□□□□ 0.11
TRIM28-203ENST00000593582 NUP205Q92621 2012 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-203ENST00000593582 MEI4A8MW99 385 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 TM4SF5O14894 197 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 RNASEH1O60930 286 aaKnown RBP15.74■□□□□ 0.11
TRIM28-203ENST00000593582 CLDN11O75508 207 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 ADCY5O95622 1261 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 DNTTP04053 509 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 C7P10643 843 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 GNSP15586 552 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 PDGFRAP16234 1089 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 TFE3P19532 575 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-203ENST00000593582 FLT3P36888 993 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 NNMTP40261 264 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 CTSOP43234 321 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-203ENST00000593582 CENPCQ03188 943 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 GFPT1Q06210 699 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-203ENST00000593582 ZNF177Q13360 481 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-203ENST00000593582 ARID5BQ14865 1188 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 TTC31Q49AM3 519 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-203ENST00000593582 ACBD5Q5T8D3 534 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-203ENST00000593582 ZNF776Q68DI1 518 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-203ENST00000593582 ARCQ7LC44 396 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 APCDD1Q8J025 514 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 SLC30A5Q8TAD4 765 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 MYO19Q96H55 970 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 MRGPRX3Q96LB0 322 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 SUSD2Q9UGT4 822 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 TMEM59LQ9UK28 342 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 SLC6A14Q9UN76 642 aa15.74■□□□□ 0.11
TRIM28-203ENST00000593582 MUC22E2RYF6 1773 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 EDDM13A0A1B0GTR0 161 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 TARSL2A2RTX5 802 aaKnown RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 SIN3BO75182 1162 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 SERPINF2P08697 491 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 CCDC172P0C7W6 258 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 ENGP17813 658 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 KCNA4P22459 653 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 MZF1P28698 734 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 GGCXP38435 758 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 NSFP46459 744 aaKnown RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 ZNF165P49910 485 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 ATXN3P54252 364 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 RPS14P62263 151 aaKnown RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 CXorf57Q6NSI4 855 aaKnown RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 LRSAM1Q6UWE0 723 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 LRRC31Q6UY01 552 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 C14orf80Q86SX3 495 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 FAM124AQ86V42 546 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 DHX40Q8IX18 779 aaKnown RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 RPL10LQ96L21 214 aaKnown RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 CFAP57Q96MR6 1250 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 RSPH9Q9H1X1 276 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 MTG2Q9H4K7 406 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 METTL5Q9NRN9 209 aaKnown RBP15.73■□□□□ 0.11
TRIM28-203ENST00000593582 CKAP5Q14008 2032 aa15.73■□□□□ 0.11
TRIM28-203ENST00000593582 TTC34A8MYJ7 566 aa15.72■□□□□ 0.11
TRIM28-203ENST00000593582 CDX4O14627 284 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-203ENST00000593582 UNGP13051 313 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-203ENST00000593582 RDXP35241 583 aaKnown RBP15.72■□□□□ 0.11
TRIM28-203ENST00000593582 MAPK8P45983 427 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms