RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ATL2Q8NHH9 583 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 OLFM3Q96PB7 478 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 LINC00597Q9H2U6 94 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 PPARGC1AQ9UBK2 798 aaKnown RBP25.82■■□□□ 1.72
SHMT1-207ENST00000580002 CLUHO75153 1309 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 ESYT3A0FGR9 886 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 ZNF135P52742 658 aaPredicted RBP25.82■■□□□ 1.72
SHMT1-207ENST00000580002 CCDC85BQ15834 202 aaPredicted RBP25.82■■□□□ 1.72
SHMT1-207ENST00000580002 FAM78AQ5JUQ0 283 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 DRICH1Q6PGQ1 229 aaPredicted RBP25.82■■□□□ 1.72
SHMT1-207ENST00000580002 SLC39A8Q9C0K1 460 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 CATSPERBQ9H7T0 1116 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 GFRA2O00451 464 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 MCF2LO15068 1137 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 RHOQP17081 205 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 RBL1P28749 1068 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 ZNF77Q15935 545 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 C5orf22Q49AR2 442 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 DARS2Q6PI48 645 aaKnown RBP25.81■■□□□ 1.72
SHMT1-207ENST00000580002 DDX42Q86XP3 938 aaKnown RBP eCLIP25.81■■□□□ 1.72
SHMT1-207ENST00000580002 MYLIPQ8WY64 445 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 MSLNLQ96KJ4 702 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 TRIM31Q9BZY9 425 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 USP29Q9HBJ7 922 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 HOMER3Q9NSC5 361 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 NEU2Q9Y3R4 380 aa25.81■■□□□ 1.72
SHMT1-207ENST00000580002 FGF10O15520 208 aaPredicted RBP25.8■■□□□ 1.72
SHMT1-207ENST00000580002 HEXIM1O94992 359 aaKnown RBP25.8■■□□□ 1.72
SHMT1-207ENST00000580002 VAV1P15498 845 aa25.8■■□□□ 1.72
SHMT1-207ENST00000580002 HOXB8P17481 243 aaPredicted RBP25.8■■□□□ 1.72
SHMT1-207ENST00000580002 FAM71DQ8N9W8 422 aa25.8■■□□□ 1.72
SHMT1-207ENST00000580002 TMEM248Q9NWD8 314 aa25.8■■□□□ 1.72
SHMT1-207ENST00000580002 LSM7Q9UK45 103 aaKnown RBP25.8■■□□□ 1.72
SHMT1-207ENST00000580002 DRG1Q9Y295 367 aaKnown RBP25.8■■□□□ 1.72
SHMT1-207ENST00000580002 WASH4PA8MWX3 477 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 TERF1P54274 439 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 ATAT1Q5SQI0 421 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 TPGS1Q6ZTW0 290 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 ALLCQ8N6M5 410 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 CCDC26Q8TAB7 109 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 MYADMQ96S97 322 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 PLK2Q9NYY3 685 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 DOCK4Q8N1I0 1966 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 H3BQ06 376 aaPredicted RBP25.79■■□□□ 1.72
SHMT1-207ENST00000580002 HTR7P34969 479 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 NR2C2P49116 596 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 VPS41P49754 854 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 GUCY2DQ02846 1103 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 COL19A1Q14993 1142 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 FAM217AQ8IXS0 508 aa25.79■■□□□ 1.72
SHMT1-207ENST00000580002 SOBPA7XYQ1 873 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 SGK1O00141 431 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 DFFAO00273 331 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 TBL1XO60907 577 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 ECEL1O95672 775 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 ITGAVP06756 1048 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 AFMIDQ63HM1 303 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 GSTA5Q7RTV2 222 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 TAB3Q8N5C8 712 aaPredicted RBP25.78■■□□□ 1.72
SHMT1-207ENST00000580002 CCNYQ8ND76 341 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 PABPC5Q96DU9 382 aaKnown RBP25.78■■□□□ 1.72
SHMT1-207ENST00000580002 ASB16Q96NS5 453 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 GAS2L1Q99501 681 aaPredicted RBP25.78■■□□□ 1.72
SHMT1-207ENST00000580002 PARD6BQ9BYG5 372 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 DPH5Q9H2P9 285 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 POMKQ9H5K3 350 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 EPB41L5Q9HCM4 733 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 CLEC4EQ9ULY5 219 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 WNT6Q9Y6F9 365 aa25.78■■□□□ 1.72
SHMT1-207ENST00000580002 HELZP42694 1942 aaKnown RBP25.78■■□□□ 1.72
SHMT1-207ENST00000580002 E2F8A0AVK6 867 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 IFNB1P01574 187 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 USP4Q13107 963 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 DHX34Q14147 1143 aaKnown RBP25.77■■□□□ 1.72
SHMT1-207ENST00000580002 MAATS1Q7Z4T9 603 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 WFDC5Q8TCV5 224 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 CEP41Q9BYV8 373 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 PRDM16Q9HAZ2 1276 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 LATS1O95835 1130 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 GALNT2Q10471 571 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 AP1B1Q10567 949 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 MTA1Q13330 715 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 GLE1Q53GS7 698 aaKnown RBP25.77■■□□□ 1.72
SHMT1-207ENST00000580002 CES5AQ6NT32 575 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 TDRD5Q8NAT2 981 aaKnown RBP25.77■■□□□ 1.72
SHMT1-207ENST00000580002 CASKIN2Q8WXE0 1202 aa25.77■■□□□ 1.72
SHMT1-207ENST00000580002 TMA16Q96EY4 203 aaKnown RBP25.77■■□□□ 1.72
SHMT1-207ENST00000580002 QKIQ96PU8 341 aaKnown RBP eCLIP25.77■■□□□ 1.72
SHMT1-207ENST00000580002 CDX2Q99626 313 aaPredicted RBP25.77■■□□□ 1.72
SHMT1-207ENST00000580002 FRMD8P1Q9BZ68 369 aaPredicted RBP25.77■■□□□ 1.72
SHMT1-207ENST00000580002 A0A0D9SEW6 157 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 BHMG1C9JSJ3 638 aaPredicted RBP25.76■■□□□ 1.71
SHMT1-207ENST00000580002 KCNN4O15554 427 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 KRT14P02533 472 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 SP100P23497 879 aaPredicted RBP25.76■■□□□ 1.71
SHMT1-207ENST00000580002 OR1E1P30953 314 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 ACVRL1P37023 503 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 PAPOLAP51003 745 aaKnown RBP25.76■■□□□ 1.71
SHMT1-207ENST00000580002 PPP1R7Q15435 360 aa25.76■■□□□ 1.71
SHMT1-207ENST00000580002 SLC45A4Q5BKX6 768 aa25.76■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms