RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 LRRN4CLQ8ND94 238 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 BPIFB1Q8TDL5 484 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 RUNDC3BQ96NL0 473 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 CHD5Q8TDI0 1954 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 HEPACAM2A8MVW5 462 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 SCAMP3O14828 347 aaKnown RBP16.59■□□□□ 0.25
SS18-211ENST00000578954 KCNA5P22460 613 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 COILP38432 576 aaPredicted RBP16.59■□□□□ 0.25
SS18-211ENST00000578954 SGSHP51688 502 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 NDST2P52849 883 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 VCPP55072 806 aaKnown RBP16.59■□□□□ 0.25
SS18-211ENST00000578954 RPS24P62847 133 aaKnown RBP16.59■□□□□ 0.25
SS18-211ENST00000578954 GALNT2Q10471 571 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 MPPE1Q53F39 396 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 OTOP3Q7RTS5 596 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 ARHGAP12Q8IWW6 846 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 C1orf54Q8WWF1 131 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 ATG4AQ8WYN0 398 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 SLCO2A1Q92959 643 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 MAGOHBQ96A72 148 aaKnown RBP16.59■□□□□ 0.25
SS18-211ENST00000578954 ELSPBP1Q96BH3 223 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 HAUS1Q96CS2 278 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 P2RY11Q96G91 374 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 DDX47Q9H0S4 455 aaKnown RBP16.59■□□□□ 0.25
SS18-211ENST00000578954 NOL6Q9H6R4 1146 aaKnown RBP16.59■□□□□ 0.25
SS18-211ENST00000578954 ZFP14Q9HCL3 533 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 NDFIP2Q9NV92 336 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 MARK1Q9P0L2 795 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 SAE1Q9UBE0 346 aaPredicted RBP16.59■□□□□ 0.25
SS18-211ENST00000578954 PCYOX1Q9UHG3 505 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 DNPEPQ9ULA0 475 aa16.59■□□□□ 0.25
SS18-211ENST00000578954 DRG1Q9Y295 367 aaKnown RBP16.59■□□□□ 0.25
SS18-211ENST00000578954 TYW5A2RUC4 315 aaKnown RBP16.58■□□□□ 0.24
SS18-211ENST00000578954 HACD1B0YJ81 288 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 TRDMT1O14717 391 aaKnown RBP16.58■□□□□ 0.24
SS18-211ENST00000578954 MCF2LO15068 1137 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 NCAM2O15394 837 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 ECI2O75521 394 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 PENKP01210 267 aaPredicted RBP16.58■□□□□ 0.24
SS18-211ENST00000578954 GBP2P32456 591 aaPredicted RBP16.58■□□□□ 0.24
SS18-211ENST00000578954 FCHO2Q0JRZ9 810 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 CCDC85BQ15834 202 aaPredicted RBP16.58■□□□□ 0.24
SS18-211ENST00000578954 TANGO2Q6ICL3 276 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 TTC27Q6P3X3 843 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 C1orf228Q6PIY5 440 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 CIR1Q86X95 450 aaPredicted RBP16.58■□□□□ 0.24
SS18-211ENST00000578954 NOA1Q8NC60 698 aaKnown RBP16.58■□□□□ 0.24
SS18-211ENST00000578954 DEPDC1BQ8WUY9 529 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 OSCP1Q8WVF1 389 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 TMA16Q96EY4 203 aaKnown RBP16.58■□□□□ 0.24
SS18-211ENST00000578954 BRD8Q9H0E9 1235 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 TBC1D30Q9Y2I9 924 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 HEY1Q9Y5J3 304 aa16.58■□□□□ 0.24
SS18-211ENST00000578954 EFCAB8A8MWE9 144 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 ANHXE9PGG2 379 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 TSPAN3O60637 253 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 ZNF189O75820 626 aaPredicted RBP16.57■□□□□ 0.24
SS18-211ENST00000578954 LUC7L3O95232 432 aaKnown RBP16.57■□□□□ 0.24
SS18-211ENST00000578954 ITGAVP06756 1048 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 RBP3P10745 1247 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 MX2P20592 715 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 HOXD9P28356 352 aaPredicted RBP16.57■□□□□ 0.24
SS18-211ENST00000578954 YBEYP58557 167 aaPredicted RBP16.57■□□□□ 0.24
SS18-211ENST00000578954 EIF3EP60228 445 aaKnown RBP16.57■□□□□ 0.24
SS18-211ENST00000578954 TUBB4BP68371 445 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 ZNF33AQ06730 810 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 BYSLQ13895 437 aaKnown RBP16.57■□□□□ 0.24
SS18-211ENST00000578954 PDK1Q15118 436 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 EML3Q32P44 896 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 LEXMQ3ZCV2 418 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 FYB2Q5VWT5 728 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 CXorf57Q6NSI4 855 aaKnown RBP16.57■□□□□ 0.24
SS18-211ENST00000578954 CCDC137Q6PK04 289 aaKnown RBP16.57■□□□□ 0.24
SS18-211ENST00000578954 VITQ6UXI7 678 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 MTSS1LQ765P7 747 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 TFAP2DQ7Z6R9 452 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 SETD3Q86TU7 594 aaPredicted RBP16.57■□□□□ 0.24
SS18-211ENST00000578954 LRRC49Q8IUZ0 686 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 MFSD6LQ8IWD5 586 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 ADGRG2Q8IZP9 1017 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 CFAP52Q8N1V2 620 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 HLA-CQ95604 372 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 HDAC11Q96DB2 347 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 QKIQ96PU8 341 aaKnown RBP eCLIP16.57■□□□□ 0.243e-6■■■■□ 23
SS18-211ENST00000578954 KRT12Q99456 494 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 FAM118BQ9BPY3 351 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 FAM83CQ9BQN1 747 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 SPHK2Q9NRA0 654 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 WNT6Q9Y6F9 365 aa16.57■□□□□ 0.24
SS18-211ENST00000578954 BCLAF3A2AJT9 711 aaKnown RBP16.56■□□□□ 0.24
SS18-211ENST00000578954 PPP1R12AO14974 1030 aaPredicted RBP16.56■□□□□ 0.24
SS18-211ENST00000578954 TBL1XO60907 577 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 CYBBP04839 570 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 OR1E1P30953 314 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 GARSP41250 739 aaKnown RBP16.56■□□□□ 0.24
SS18-211ENST00000578954 PTGIRP43119 386 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 DHX34Q14147 1143 aaKnown RBP16.56■□□□□ 0.24
SS18-211ENST00000578954 PRKD1Q15139 912 aaPredicted RBP16.56■□□□□ 0.24
SS18-211ENST00000578954 PDGFRLQ15198 375 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 PARP15Q460N3 678 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms