RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 C4orf32Q8N8J7 132 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 NAT6Q93015 286 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 FIZ1Q96SL8 496 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 MTMR12Q9C0I1 747 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 PRDM8Q9NQV8 689 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 ABCB8Q9NUT2 735 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 GGA2Q9UJY4 613 aa16.89■□□□□ 0.29
VPS53-218ENST00000575207 HNRNPRO43390 633 aaKnown RBP16.88■□□□□ 0.29
VPS53-218ENST00000575207 PABPC1P11940 636 aaKnown RBP16.88■□□□□ 0.29
VPS53-218ENST00000575207 FDPSP14324 419 aaKnown RBP16.88■□□□□ 0.29
VPS53-218ENST00000575207 CORO1AP31146 461 aaKnown RBP16.88■□□□□ 0.29
VPS53-218ENST00000575207 CCKBRP32239 447 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 ZNF131P52739 623 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 COG7P83436 770 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 POSTNQ15063 836 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 SETMARQ53H47 684 aaPredicted RBP16.88■□□□□ 0.29
VPS53-218ENST00000575207 DYMQ7RTS9 669 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 ZNF276Q8N554 614 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 ZNF548Q8NEK5 533 aaPredicted RBP16.88■□□□□ 0.29
VPS53-218ENST00000575207 ZMIZ2Q8NF64 920 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 POMGNT1Q8WZA1 660 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 CCDC3Q9BQI4 270 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 MMTAG2Q9BU76 263 aaKnown RBP16.88■□□□□ 0.29
VPS53-218ENST00000575207 RAB34Q9BZG1 259 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 NMUR1Q9HB89 426 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 CASS4Q9NQ75 786 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 R3HCC1Q9Y3T6 440 aaKnown RBP16.88■□□□□ 0.29
VPS53-218ENST00000575207 UBE4BO95155 1302 aa16.88■□□□□ 0.29
VPS53-218ENST00000575207 PP2D1A8MPX8 630 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 C9orf172C9J069 976 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 TPP1O14773 563 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 MUSKO15146 869 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 CTDNEP1O95476 244 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 ITIH1P19827 911 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 DRD3P35462 400 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 POM121L1PQ3SYA9 428 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 MPPE1Q53F39 396 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 C10orf120Q5SQS8 335 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 KCTD17Q8N5Z5 321 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 MYCT1Q8N699 235 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 MARVELD3Q96A59 401 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 SMARCD1Q96GM5 515 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 FAM129BQ96TA1 746 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 FAM213AQ9BRX8 229 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 B3GNT4Q9C0J1 378 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 SCML2Q9UQR0 700 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 LOXL2Q9Y4K0 774 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 ATP8B3O60423 1300 aa16.87■□□□□ 0.29
VPS53-218ENST00000575207 TACC2O95359 2948 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 TARSL2A2RTX5 802 aaKnown RBP16.86■□□□□ 0.29
VPS53-218ENST00000575207 ADH1BP00325 375 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 TMEM191BP0C7N4 346 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 ITGB7P26010 798 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 BMT2Q1RMZ1 405 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 DENND1CQ8IV53 801 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 SLC22A18ASQ8N1D0 253 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 BOCQ9BWV1 1114 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 ZSWIM6Q9HCJ5 1215 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 RBAKQ9NYW8 714 aaPredicted RBP16.86■□□□□ 0.29
VPS53-218ENST00000575207 TP53TG5Q9Y2B4 290 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 SHANK1Q9Y566 2161 aa16.86■□□□□ 0.29
VPS53-218ENST00000575207 VWA3AA6NCI4 1184 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 D6RAR5 112 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 SLC7A4O43246 635 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 PLRG1O43660 514 aaKnown RBP16.85■□□□□ 0.29
VPS53-218ENST00000575207 POLR2EP19388 210 aaKnown RBP16.85■□□□□ 0.29
VPS53-218ENST00000575207 PSMD8P48556 350 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 RPIAP49247 311 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 HYIQ5T013 277 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.85■□□□□ 0.29
VPS53-218ENST00000575207 TADA2BQ86TJ2 420 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 KDM1BQ8NB78 822 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 ZSWIM2Q8NEG5 633 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 OR13H1Q8NG92 308 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 CPT1CQ8TCG5 803 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 APOBEC4Q8WW27 367 aaKnown RBP16.85■□□□□ 0.29
VPS53-218ENST00000575207 USP7Q93009 1102 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 NKD1Q969G9 470 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 TMEM159Q96B96 161 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 TCTN2Q96GX1 697 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 SMOQ99835 787 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 REEP2Q9BRK0 252 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 CALN1Q9BXU9 219 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 FOXP3Q9BZS1 431 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 IKZF4Q9H2S9 585 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 PARVGQ9HBI0 331 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 CSNK1G1Q9HCP0 422 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 DNAJC28Q9NX36 388 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 CYP46A1Q9Y6A2 500 aa16.85■□□□□ 0.29
VPS53-218ENST00000575207 ZNF891A8MT65 544 aaPredicted RBP16.84■□□□□ 0.29
VPS53-218ENST00000575207 A8MXQ7 604 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 AP1G2O75843 785 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 BEST1O76090 585 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 PLA2G4BP0C869 781 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 HOXB4P17483 251 aaPredicted RBP16.84■□□□□ 0.29
VPS53-218ENST00000575207 ETV5P41161 510 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 ST8SIA6P61647 398 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 ZNF542PQ5EBM4 170 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 GPBAR1Q8TDU6 330 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 TMEM74Q96NL1 305 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms