RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 Q3C1V9 767 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 CCDC153Q494R4 210 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 TXNRD3NBQ6F5E7 133 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 PRRT2Q7Z6L0 340 aaPredicted RBP9.8□□□□□ -0.84
CCDC40-212ENST00000574799 IFNLR1Q8IU57 520 aaPredicted RBP9.8□□□□□ -0.84
CCDC40-212ENST00000574799 IGDCC3Q8IVU1 814 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 C12orf43Q96C57 262 aaKnown RBP9.8□□□□□ -0.84
CCDC40-212ENST00000574799 CLK4Q9HAZ1 481 aaKnown RBP9.8□□□□□ -0.84
CCDC40-212ENST00000574799 STK39Q9UEW8 545 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 TBX20Q9UMR3 447 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 EFR3BQ9Y2G0 817 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 PPP2R3BQ9Y5P8 575 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 A0A1W2PPW3 197 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 H3BNX3 289 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 BCL10O95999 233 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 HLA-DRAP01903 254 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 JAK1P23458 1154 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 ICAM3P32942 547 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 THOP1P52888 689 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 CDH6P55285 790 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 CLDN10P78369 228 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 BTG3Q14201 252 aaPredicted RBP9.8□□□□□ -0.84
CCDC40-212ENST00000574799 MYBPC2Q14324 1141 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 PIGHQ14442 188 aaPredicted RBP9.8□□□□□ -0.84
CCDC40-212ENST00000574799 LDLRAP1Q5SW96 308 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 GPAT2Q6NUI2 795 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 SCARA5Q6ZMJ2 495 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 ZNF677Q86XU0 584 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 RCN3Q96D15 328 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 ZNF512Q96ME7 567 aaPredicted RBP9.8□□□□□ -0.84
CCDC40-212ENST00000574799 COQ10BQ9H8M1 238 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 ARHGAP28Q9P2N2 729 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 GABBR1Q9UBS5 961 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 FETUBQ9UGM5 382 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 CTDP1Q9Y5B0 961 aaPredicted RBP9.8□□□□□ -0.84
CCDC40-212ENST00000574799 SQORQ9Y6N5 450 aa9.8□□□□□ -0.84
CCDC40-212ENST00000574799 DHRS4L1P0CG22 281 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 IDO1P14902 403 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 POLR2BP30876 1174 aaKnown RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 CPOXP36551 454 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ACTR2P61160 394 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 CDKL1Q00532 357 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 GNA12Q03113 381 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 PTP4A2Q12974 167 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 TARBP2Q15633 366 aaKnown RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ZNF423Q2M1K9 1284 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ZNF618Q5T7W0 954 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 DCAF15Q66K64 600 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ADAM32Q8TC27 787 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 DDX1Q92499 740 aaKnown RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 NKD2Q969F2 451 aaPredicted RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 NRBF2Q96F24 287 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 TEX13BQ9BXU2 312 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 WDR41Q9HAD4 459 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 CXorf21Q9HAI6 301 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ANKEF1Q9NU02 776 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 MYPNQ86TC9 1320 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 CNTNAP2Q9UHC6 1331 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 CXorf49A8MYA2 514 aaPredicted RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 KPNA4O00629 521 aaPredicted RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 PMM2O15305 246 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ZC3H11AO75152 810 aaKnown RBP eCLIP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 P4HA1P13674 534 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 TFE3P19532 575 aaPredicted RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 IDH3AP50213 366 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 SERPINB9P50453 376 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 NME3Q13232 169 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 FAM91A1Q658Y4 838 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ARCQ7LC44 396 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 KBTBD6Q86V97 674 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ABRAQ8N0Z2 381 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 MARK4Q96L34 752 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 GIN1Q9NXP7 522 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 IGSF9Q9P2J2 1179 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 CDC14AQ9UNH5 594 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 PCDHA10Q9Y5I2 948 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 PDCD11Q14690 1871 aaKnown RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ADGRA2Q96PE1 1338 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 GLRA3O75311 464 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 GPC4O75487 556 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 SERPINB7O75635 380 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 KRT3P12035 628 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 UNGP13051 313 aaPredicted RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ACOT2P49753 483 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 SESN2P58004 480 aaPredicted RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ZNF829Q3KNS6 432 aaPredicted RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 DCAF6Q58WW2 860 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ZBTB41Q5SVQ8 909 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 SLC2A7Q6PXP3 512 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 SETD3Q86TU7 594 aaPredicted RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 C10orf107Q8IVU9 208 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 DSELQ8IZU8 1212 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ZNF276Q8N554 614 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 PCDH20Q8N6Y1 951 aaKnown RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 NAT8LQ8N9F0 302 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 TFB1MQ8WVM0 346 aaKnown RBP9.79□□□□□ -0.84
CCDC40-212ENST00000574799 ATP6V1E2Q96A05 226 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 TAMM41Q96BW9 452 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 MFSD14AQ96MC6 490 aa9.79□□□□□ -0.84
CCDC40-212ENST00000574799 OSBPL11Q9BXB4 747 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms