RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RPL22P35268 128 aaKnown RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 YBEYP58557 167 aaPredicted RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 DEFB103AP81534 67 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 GALNT2Q10471 571 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 NR1H3Q13133 447 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 PRPSAP1Q14558 356 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 STAT4Q14765 748 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 LLGL1Q15334 1064 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 TPSAB1Q15661 275 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 HIF1AQ16665 826 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 CA9Q16790 459 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 CCDC142Q17RM4 750 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 C10orf120Q5SQS8 335 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 TMEM240Q5SV17 173 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 RNASEH2BQ5TBB1 312 aaKnown RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 TTC39BQ5VTQ0 682 aaPredicted RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 OTUD1Q5VV17 481 aaPredicted RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 PRSS55Q6UWB4 352 aaPredicted RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 ARHGEF18Q6ZSZ5 1173 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 TAS1R1Q7RTX1 841 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 ZC3H18Q86VM9 953 aaKnown RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 HERC6Q8IVU3 1022 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 NPAS3Q8IXF0 933 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 RIBC1Q8N443 379 aaPredicted RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 FAM71DQ8N9W8 422 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 CCNYQ8ND76 341 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 NSMCE1Q8WV22 266 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 BADQ92934 168 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 IRF7Q92985 503 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 FCRL2Q96LA5 508 aaPredicted RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 ZNF512Q96ME7 567 aaPredicted RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 OLFM3Q96PB7 478 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 GCNAQ96QF7 691 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 RBM15Q96T37 977 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS39-213ENST00000570062 NAT9Q9BTE0 207 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 RHOBTB2Q9BYZ6 727 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 PLEKHA4Q9H4M7 779 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 XAB2Q9HCS7 855 aaKnown RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 EIF2B3Q9NR50 452 aaKnown RBP8.2□□□□□ -1.1
VPS39-213ENST00000570062 GPATCH2LQ9NWQ4 482 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 COX16Q9P0S2 106 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 GMIPQ9P107 970 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 FETUBQ9UGM5 382 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 ZNF510Q9Y2H8 683 aa8.2□□□□□ -1.1
VPS39-213ENST00000570062 A0A087WUV0 522 aaPredicted RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 A0A0A0MRY4 1105 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 MAGEB16A2A368 324 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 ZNF840PA6NDX5 716 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 C5orf67F2Z3F1 127 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 LILRB3O75022 631 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 PAGE1O75459 146 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 LRIG2O94898 1065 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 CXCL14O95715 111 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 IGLV3-27P01718 113 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 LRG1P02750 347 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 FAM153BP0C7A2 387 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 ACRP10323 421 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 PECAM1P16284 738 aaPredicted RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 EN2P19622 333 aaPredicted RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 ITGB8P26012 769 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 DDX6P26196 483 aaKnown RBP eCLIP8.19□□□□□ -1.1
VPS39-213ENST00000570062 RBL1P28749 1068 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 BMPR1AP36894 532 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 ETFBP38117 255 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 MAGEA4P43358 317 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 MAPKAPK2P49137 400 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 LMAN1P49257 510 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 ATXN1P54253 815 aaKnown RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 PPIDQ08752 370 aaKnown RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 IFRD2Q12894 506 aaPredicted RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 PRKD1Q15139 912 aaPredicted RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 RASA2Q15283 850 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 TRIP13Q15645 432 aaPredicted RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 FAM153CQ494X1 144 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 RABGAP1LQ5R372 815 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 AGBL2Q5U5Z8 902 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 RWDD4Q6NW29 188 aaKnown RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 RSPO2Q6UXX9 243 aaPredicted RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 TMC7Q7Z402 723 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 TMEM173Q86WV6 379 aaPredicted RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 GSPT2Q8IYD1 628 aaKnown RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 RTL3Q8N8U3 475 aaKnown RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 NAT8LQ8N9F0 302 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 PRR7Q8TB68 274 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 BCL7CQ8WUZ0 217 aaPredicted RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 CASP10Q92851 521 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 PSMG2Q969U7 264 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 PGM2Q96G03 612 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 SPATA13Q96N96 652 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 SERPINB12Q96P63 405 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 ZIM3Q96PE6 472 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 HINFPQ9BQA5 517 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 ZYG11BQ9C0D3 744 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 ZBP1Q9H171 429 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 ADAM7Q9H2U9 754 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 NMUR1Q9HB89 426 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 RAB6BQ9NRW1 208 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 ETNK2Q9NVF9 386 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 IGSF9Q9P2J2 1179 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 FAM153AQ9UHL3 310 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms