RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PDXKO00764 312 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 THAP12O43422 761 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 NADKO95544 446 aaPredicted RBP11.09□□□□□ -0.63
CLK3-226ENST00000569406 ZNF182P17025 639 aaPredicted RBP11.09□□□□□ -0.63
CLK3-226ENST00000569406 BTF3P20290 206 aaKnown RBP11.09□□□□□ -0.63
CLK3-226ENST00000569406 GALK2Q01415 458 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 TAP1Q03518 808 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 KRT80Q6KB66 452 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 PPP4R3CPQ6ZMV5 832 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 FRMD5Q7Z6J6 570 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 LRRC71Q8N4P6 559 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 C18orf8Q96DM3 657 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 PSD2Q9BQI7 771 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 KATNAL1Q9BW62 490 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 MKRN2Q9H000 416 aaKnown RBP11.09□□□□□ -0.63
CLK3-226ENST00000569406 GHITMQ9H3K2 345 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 DMAC2Q9NW81 257 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 ACTR3BQ9P1U1 418 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 CPNE7Q9UBL6 633 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 GRID1Q9ULK0 1009 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 LOC285556D6RIA3 1793 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 FADS2P1A8MWK0 482 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 MUSKO15146 869 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 CLIC2O15247 247 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 HLA-DRAP01903 254 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 UCHL3P15374 230 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 NMT1P30419 496 aaKnown RBP11.09□□□□□ -0.63
CLK3-226ENST00000569406 CAP2P40123 477 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 ARPP19P56211 112 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 SLC18A3Q16572 532 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 KIZQ2M2Z5 673 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 GJB7Q6PEY0 223 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 ADGRG6Q86SQ4 1221 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 EFCAB3Q8N7B9 438 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 SEPT1Q8WYJ6 367 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 TRIM63Q969Q1 353 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 TMEM120AQ9BXJ8 343 aa11.09□□□□□ -0.63
CLK3-226ENST00000569406 PPARGC1AQ9UBK2 798 aaKnown RBP11.09□□□□□ -0.63
CLK3-226ENST00000569406 PPP1R1BQ9UD71 204 aaPredicted RBP11.09□□□□□ -0.63
CLK3-226ENST00000569406 FRMPD4Q14CM0 1322 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 NUAK1O60285 661 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 SERPING1P05155 500 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 ALOX5P09917 674 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 PSMC3P17980 439 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 EIF3EP60228 445 aaKnown RBP11.08□□□□□ -0.63
CLK3-226ENST00000569406 NFE2L1Q14494 772 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 PDK4Q16654 411 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 AARS2Q5JTZ9 985 aaKnown RBP11.08□□□□□ -0.63
CLK3-226ENST00000569406 BTLAQ7Z6A9 289 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 PJA1Q8NG27 643 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 NXPE3Q969Y0 559 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 LRGUKQ96M69 825 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 TRIM56Q9BRZ2 755 aaKnown RBP11.08□□□□□ -0.63
CLK3-226ENST00000569406 MROQ9BYG7 248 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 NMUR2Q9GZQ4 415 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 STN1Q9H668 368 aaKnown RBP11.08□□□□□ -0.63
CLK3-226ENST00000569406 ERVK-5Q9HDB9 667 aa11.08□□□□□ -0.63
CLK3-226ENST00000569406 KIAA1217Q5T5P2 1943 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 CHMP2AO43633 222 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 LRRN2O75325 713 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 PRDX6P30041 224 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 LRPAP1P30533 357 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 SOX11P35716 441 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 MYL6P60660 151 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 NFIL3Q16649 462 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 DGKDQ16760 1214 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 NDUFAF5Q5TEU4 345 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 ZNF772Q68DY9 489 aaPredicted RBP11.08□□□□□ -0.64
CLK3-226ENST00000569406 FBXL6Q8N531 539 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 LRRC57Q8N9N7 239 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 TTC13Q8NBP0 860 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 LMO3Q8TAP4 145 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 CEP170P1Q96L14 293 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 CYP4F11Q9HBI6 524 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 GRHL1Q9NZI5 618 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 PARP2Q9UGN5 583 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 ARID2Q68CP9 1835 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 TRIM77I1YAP6 450 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 WNT10BO00744 389 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 CES2O00748 559 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 AURKAO14965 403 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 SORBS2O94875 1100 aaKnown RBP11.08□□□□□ -0.64
CLK3-226ENST00000569406 NR3C1P04150 777 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 TP53P04637 393 aaPredicted RBP11.08□□□□□ -0.64
CLK3-226ENST00000569406 SNRPAP09012 282 aaKnown RBP11.08□□□□□ -0.64
CLK3-226ENST00000569406 MCF2P10911 925 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 MAP4P27816 1152 aaKnown RBP11.08□□□□□ -0.64
CLK3-226ENST00000569406 ABCG1P45844 678 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 PTENP60484 403 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 DLG4P78352 724 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 CD83Q01151 205 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 SNX17Q15036 470 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 FAM214AQ32MH5 1076 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 INAVAQ3KP66 663 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 DNAL1Q4LDG9 190 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 AADATQ8N5Z0 425 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 MAML1Q92585 1016 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 ABCG4Q9H172 646 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 SYTL2Q9HCH5 934 aa11.08□□□□□ -0.64
CLK3-226ENST00000569406 KANSL3Q9P2N6 904 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms