RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ARHGEF38Q9NXL2 777 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 IL1RAPL1Q9NZN1 696 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 PSAT1Q9Y617 370 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 FRMPD3Q5JV73 1810 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 TOP3BO95985 862 aaKnown RBP20.78■□□□□ 0.92
CLN3-230ENST00000568076 CCNB1P14635 433 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 SERPINB6P35237 376 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 DSC1Q08554 894 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 ARTNQ5T4W7 220 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 FYB2Q5VWT5 728 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 PACS1Q6VY07 963 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 SCD5Q86SK9 330 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 NDUFAF2Q8N183 169 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 ARMC2Q8NEN0 867 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 LRRC37BQ96QE4 947 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 GBA3Q9H227 469 aa20.78■□□□□ 0.92
CLN3-230ENST00000568076 C2CD2LO14523 706 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 MGRN1O60291 552 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 ZNF189O75820 626 aaPredicted RBP20.77■□□□□ 0.92
CLN3-230ENST00000568076 SRGAP2BP0DMP2 458 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 NQO1P15559 274 aaKnown RBP20.77■□□□□ 0.92
CLN3-230ENST00000568076 GRIK1P39086 918 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 SETDB1Q15047 1291 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 TEX44Q53QW1 395 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 PARP9Q8IXQ6 854 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 KIF2BQ8N4N8 673 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 CASP10Q92851 521 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 FCRL3Q96P31 734 aaPredicted RBP20.77■□□□□ 0.92
CLN3-230ENST00000568076 NAT9Q9BTE0 207 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 SIK2Q9H0K1 926 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 SFMBT1Q9UHJ3 866 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 DCTN4Q9UJW0 460 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 NUMBLQ9Y6R0 609 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 KLF11O14901 512 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 MSI1O43347 362 aaKnown RBP20.77■□□□□ 0.92
CLN3-230ENST00000568076 DCTN3O75935 186 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 UNC5CO95185 931 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 TROVE2P10155 538 aaKnown RBP eCLIP20.77■□□□□ 0.92
CLN3-230ENST00000568076 NFKB1P19838 968 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 CNTFP26441 200 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 ALDH3A1P30838 453 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 SLC39A12Q504Y0 691 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 CES4AQ5XG92 561 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 GLB1LQ6UWU2 654 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 C4orf50Q6ZRC1 276 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 SLC24A5Q71RS6 500 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 NLRP9Q7RTR0 991 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 ZNF398Q8TD17 642 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 CASS4Q9NQ75 786 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 ARHGEF3Q9NR81 526 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 ABCC13Q9NSE7 274 aa20.77■□□□□ 0.92
CLN3-230ENST00000568076 MTSS1O43312 755 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 ALDOAP04075 364 aaKnown RBP20.76■□□□□ 0.91
CLN3-230ENST00000568076 CRHR1P34998 444 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 SKIV2L2P42285 1042 aaKnown RBP20.76■□□□□ 0.91
CLN3-230ENST00000568076 BTBD8Q5XKL5 378 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 ARHGAP36Q6ZRI8 547 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 COLGALT2Q8IYK4 626 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 STKLD1Q8NE28 680 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 CDKL2Q92772 493 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 KLHL29Q96CT2 875 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 TRIM62Q9BVG3 475 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 KCNK13Q9HB14 408 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 NMUR1Q9HB89 426 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 SRRDQ9UH36 339 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 TRHDEQ9UKU6 1024 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 RPS6KL1Q9Y6S9 549 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 NUP205Q92621 2012 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 ARHGEF37A1IGU5 675 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 EOMESO95936 686 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 POLBP06746 335 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 ERVK-10P10266 1014 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 NEFHP12036 1026 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 RWDD4Q6NW29 188 aaKnown RBP20.76■□□□□ 0.91
CLN3-230ENST00000568076 TEKT5Q96M29 485 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 GLT1D1Q96MS3 346 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 SMOC2Q9H3U7 446 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 NUDT5Q9UKK9 219 aa20.76■□□□□ 0.91
CLN3-230ENST00000568076 PAGE1O75459 146 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 IL1BP01584 269 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 JCHAINP01591 159 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 CYP2C18P33260 490 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 FAM189BP81408 668 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 NOMO2Q5JPE7 1267 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 SPANXN3Q5MJ09 141 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 ARHGAP12Q8IWW6 846 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 CNTD1Q8N815 330 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 CERS2Q96G23 380 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 HAPLN3Q96S86 360 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 VAT1Q99536 393 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 ZCWPW1Q9H0M4 648 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 OSER1Q9NX31 292 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 SIRPGQ9P1W8 387 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 DNAJB4Q9UDY4 337 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 VANGL2Q9ULK5 521 aa20.75■□□□□ 0.91
CLN3-230ENST00000568076 TGDSO95455 350 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 NAB1Q13506 487 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 BRMS1LQ5PSV4 323 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 CERCAMQ5T4B2 595 aa20.74■□□□□ 0.91
CLN3-230ENST00000568076 MANEALQ5VSG8 457 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms