RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SH3PXD2AQ5TCZ1 1133 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 OTUD1Q5VV17 481 aaPredicted RBP17.83■□□□□ 0.44
CLN3-217ENST00000565354 STRADAQ7RTN6 431 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 C12orf40Q86WS4 652 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 FAM131BQ86XD5 332 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 LGI2Q8N0V4 545 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 HJURPQ8NCD3 748 aaPredicted RBP17.83■□□□□ 0.44
CLN3-217ENST00000565354 CTNNBL1Q8WYA6 563 aaPredicted RBP17.83■□□□□ 0.44
CLN3-217ENST00000565354 PANX2Q96RD6 677 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 TMEM121BQ9BXQ6 578 aaPredicted RBP17.83■□□□□ 0.44
CLN3-217ENST00000565354 ADAM33Q9BZ11 813 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 SIK2Q9H0K1 926 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 THAP2Q9H0W7 228 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 SPTLC3Q9NUV7 552 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 STIM2Q9P246 746 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 EBF1Q9UH73 591 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 XPO7Q9UIA9 1087 aaKnown RBP17.83■□□□□ 0.44
CLN3-217ENST00000565354 PCNX2A6NKB5 2137 aa17.83■□□□□ 0.44
CLN3-217ENST00000565354 CCP110O43303 1012 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 CACNG3O60359 315 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 TBL1XO60907 577 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 TULP3O75386 442 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 APBB3O95704 486 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 H2AFZP0C0S5 128 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 SPINK2P20155 84 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 SLC6A4P31645 630 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 CYLC1P35663 651 aaPredicted RBP17.82■□□□□ 0.44
CLN3-217ENST00000565354 DGKGP49619 791 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 ZNF143P52747 638 aaPredicted RBP17.82■□□□□ 0.44
CLN3-217ENST00000565354 GALCP54803 685 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 GAB4Q2WGN9 574 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 FBXO43Q4G163 708 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 FAM133BQ5BKY9 247 aaKnown RBP17.82■□□□□ 0.44
CLN3-217ENST00000565354 PPP1R15BQ5SWA1 713 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 FYB2Q5VWT5 728 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 NAIF1Q69YI7 327 aaPredicted RBP17.82■□□□□ 0.44
CLN3-217ENST00000565354 NADSYN1Q6IA69 706 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 SCYL2Q6P3W7 929 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 H2AFVQ71UI9 128 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 SYT13Q7L8C5 426 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 CNPY3Q9BT09 278 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 IRX2Q9BZI1 471 aaPredicted RBP17.82■□□□□ 0.44
CLN3-217ENST00000565354 GRPEL1Q9HAV7 217 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 ARHGEF38Q9NXL2 777 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 CALCOCO1Q9P1Z2 691 aa17.82■□□□□ 0.44
CLN3-217ENST00000565354 PI4KAP42356 2102 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 TBC1D3BA6NDS4 549 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 PAGE1O75459 146 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 ENDOD1O94919 500 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 PENKP01210 267 aaPredicted RBP17.81■□□□□ 0.44
CLN3-217ENST00000565354 CEACAM1P13688 526 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 ASTE1Q2TB18 679 aaPredicted RBP17.81■□□□□ 0.44
CLN3-217ENST00000565354 MS4A13Q5J8X5 152 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 RABGAP1LQ5R372 815 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 PIK3R6Q5UE93 754 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 ETFBKMTQ8IXQ9 262 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 RPLP0P6Q8NHW5 317 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 CCDC26Q8TAB7 109 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 NUP85Q9BW27 656 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 TMEM9BQ9NQ34 198 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 GON4LQ3T8J9 2241 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 MYOFQ9NZM1 2061 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 CACNA1EQ15878 2313 aa17.81■□□□□ 0.44
CLN3-217ENST00000565354 NBEAQ8NFP9 2946 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 RNF8O76064 485 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 KAT7O95251 611 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 IPO7O95373 1038 aaKnown RBP17.8■□□□□ 0.44
CLN3-217ENST00000565354 CSRP1P21291 193 aaKnown RBP17.8■□□□□ 0.44
CLN3-217ENST00000565354 GRIA2P42262 883 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 DMC1Q14565 340 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 ACAP1Q15027 740 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 ACBD5Q5T8D3 534 aaPredicted RBP17.8■□□□□ 0.44
CLN3-217ENST00000565354 LRRC31Q6UY01 552 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 TMTC1Q8IUR5 882 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 CCDC170Q8IYT3 715 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 CARNMT1Q8N4J0 409 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 ZNF557Q8N988 423 aaPredicted RBP17.8■□□□□ 0.44
CLN3-217ENST00000565354 GATA6Q92908 595 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 ACDQ96AP0 544 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 RPRD1AQ96P16 312 aaPredicted RBP17.8■□□□□ 0.44
CLN3-217ENST00000565354 LUC7LQ9NQ29 371 aaKnown RBP17.8■□□□□ 0.44
CLN3-217ENST00000565354 CTTNBP2NLQ9P2B4 639 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 HS3ST4Q9Y661 456 aa17.8■□□□□ 0.44
CLN3-217ENST00000565354 TMEM191CA6NGB0 347 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 KHNYNO15037 678 aaKnown RBP17.79■□□□□ 0.44
CLN3-217ENST00000565354 TOP3BO95985 862 aaKnown RBP17.79■□□□□ 0.44
CLN3-217ENST00000565354 CYP1A2P05177 515 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 HOXD9P28356 352 aaPredicted RBP17.79■□□□□ 0.44
CLN3-217ENST00000565354 GGCXP38435 758 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 SGSHP51688 502 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 SEC13P55735 322 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 HDAC4P56524 1084 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 AUHQ13825 339 aaKnown RBP17.79■□□□□ 0.44
CLN3-217ENST00000565354 SPA17Q15506 151 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 C10orf76Q5T2E6 689 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 MPP7Q5T2T1 576 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 TTC39BQ5VTQ0 682 aaPredicted RBP17.79■□□□□ 0.44
CLN3-217ENST00000565354 BNIPLQ7Z465 357 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 MFN1Q8IWA4 741 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 CFAP52Q8N1V2 620 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms