RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 INTS6Q9UL03 887 aaKnown RBP19.67■□□□□ 0.74
VPS35-202ENST00000561713 TLR6Q9Y2C9 796 aa19.67■□□□□ 0.74
VPS35-202ENST00000561713 URB1O60287 2271 aaKnown RBP19.67■□□□□ 0.74
VPS35-202ENST00000561713 SYNJ2BP-COX16A0A087WUM0 186 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 CAPN9O14815 690 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 IRAK2O43187 625 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 TNFSF14O43557 240 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 SEMA4FO95754 770 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 DLDP09622 509 aaKnown RBP19.66■□□□□ 0.74
VPS35-202ENST00000561713 POLR2EP19388 210 aaKnown RBP19.66■□□□□ 0.74
VPS35-202ENST00000561713 CTSOP43234 321 aaPredicted RBP19.66■□□□□ 0.74
VPS35-202ENST00000561713 UBE2HP62256 183 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 RPS14P62263 151 aaKnown RBP19.66■□□□□ 0.74
VPS35-202ENST00000561713 CDH18Q13634 790 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 TEAD4Q15561 434 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 ZC3H12AQ5D1E8 599 aaKnown RBP19.66■□□□□ 0.74
VPS35-202ENST00000561713 FSCBQ5H9T9 825 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 MS4A13Q5J8X5 152 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 IRF2BP1Q8IU81 584 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 LGI2Q8N0V4 545 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 MYO19Q96H55 970 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 CRELD1Q96HD1 420 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 COX16Q9P0S2 106 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 PLA2G4CQ9UP65 541 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 DOCK9Q9BZ29 2069 aa19.66■□□□□ 0.74
VPS35-202ENST00000561713 SETXQ7Z333 2677 aaKnown RBP19.66■□□□□ 0.74
VPS35-202ENST00000561713 H0Y8X5 98 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 SART1O43290 800 aaKnown RBP19.65■□□□□ 0.74
VPS35-202ENST00000561713 MED7O43513 233 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 KALRNO60229 2985 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 GRAP2O75791 330 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 FSBPO95073 299 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 APOEP02649 317 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 C7P10643 843 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 GRK6P43250 576 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 ACADSBP45954 432 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 GRIA4P48058 902 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 IL9RQ01113 521 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 SMAD1Q15797 465 aaKnown RBP19.65■□□□□ 0.74
VPS35-202ENST00000561713 HSP90AA4PQ58FG1 418 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 DCAF6Q58WW2 860 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 DHX40Q8IX18 779 aaKnown RBP19.65■□□□□ 0.74
VPS35-202ENST00000561713 IGSF8Q969P0 613 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 CPXM1Q96SM3 734 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 BTBD1Q9H0C5 482 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 FAM204AQ9H8W3 233 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 OSGEPQ9NPF4 335 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 APEX2Q9UBZ4 518 aa19.65■□□□□ 0.74
VPS35-202ENST00000561713 GOLGA4Q13439 2230 aaKnown RBP19.65■□□□□ 0.74
VPS35-202ENST00000561713 TYW5A2RUC4 315 aaKnown RBP19.64■□□□□ 0.73
VPS35-202ENST00000561713 SIN3BO75182 1162 aa19.64■□□□□ 0.73
VPS35-202ENST00000561713 LUC7L3O95232 432 aaKnown RBP19.64■□□□□ 0.73
VPS35-202ENST00000561713 FGFR1OPO95684 399 aaKnown RBP19.64■□□□□ 0.73
VPS35-202ENST00000561713 TRUB2O95900 331 aaKnown RBP19.64■□□□□ 0.73
VPS35-202ENST00000561713 ATP5BP06576 529 aaKnown RBP19.64■□□□□ 0.73
VPS35-202ENST00000561713 CD27P26842 260 aa19.64■□□□□ 0.73
VPS35-202ENST00000561713 GGCXP38435 758 aa19.64■□□□□ 0.73
VPS35-202ENST00000561713 MTIF2P46199 727 aaKnown RBP19.64■□□□□ 0.73
VPS35-202ENST00000561713 NNTQ13423 1086 aa19.64■□□□□ 0.73
VPS35-202ENST00000561713 PITRM1Q5JRX3 1037 aa19.64■□□□□ 0.73
VPS35-202ENST00000561713 MPP7Q5T2T1 576 aa19.64■□□□□ 0.73
VPS35-202ENST00000561713 C1orf131Q8NDD1 294 aaKnown RBP19.64■□□□□ 0.73
VPS35-202ENST00000561713 ORAI3Q9BRQ5 295 aa19.64■□□□□ 0.73
VPS35-202ENST00000561713 SERGEFQ9UGK8 458 aa19.64■□□□□ 0.73
VPS35-202ENST00000561713 PCDHGA12O60330 932 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 IGLV3-25P01717 112 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 DNTTP04053 509 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 TACR2P21452 398 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 PON1P27169 355 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 CTSKP43235 329 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 CCT8P50990 548 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 EXOC3L4Q17RC7 722 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 ZNF776Q68DI1 518 aaPredicted RBP19.63■□□□□ 0.73
VPS35-202ENST00000561713 DHRS13Q6UX07 377 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 GBP6Q6ZN66 633 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 ENOSF1Q7L5Y1 443 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 PDCD7Q8N8D1 485 aaKnown RBP19.63■□□□□ 0.73
VPS35-202ENST00000561713 FIBINQ8TAL6 211 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 SHC3Q92529 594 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 MRGPRX3Q96LB0 322 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 DDX50Q9BQ39 737 aaKnown RBP19.63■□□□□ 0.73
VPS35-202ENST00000561713 POPDC2Q9HBU9 364 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 SIX2Q9NPC8 291 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 PLCB1Q9NQ66 1216 aa19.63■□□□□ 0.73
VPS35-202ENST00000561713 A0A087WV48 116 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 TTC34A8MYJ7 566 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 STK19P49842 368 aaPredicted RBP19.62■□□□□ 0.73
VPS35-202ENST00000561713 IRAK1P51617 712 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 CENPCQ03188 943 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 ZBTB16Q05516 673 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 MEA1Q16626 185 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 DPCR1Q3MIW9 517 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 TTC31Q49AM3 519 aaPredicted RBP19.62■□□□□ 0.73
VPS35-202ENST00000561713 FAM183BPQ6ZVS7 135 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 ADAT2Q7Z6V5 191 aaKnown RBP19.62■□□□□ 0.73
VPS35-202ENST00000561713 TMEM110Q86TL2 294 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 APCDD1Q8J025 514 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 DEFB106AQ8N104 65 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 WDTC1Q8N5D0 677 aa19.62■□□□□ 0.73
VPS35-202ENST00000561713 STK32AQ8WU08 396 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms