RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 H7C0C1 242 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 NCAM2O15394 837 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 TBX10O75333 385 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 PRAMEF12O95522 483 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 ATP5OP48047 213 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 DLX2Q07687 328 aaPredicted RBP12.53□□□□□ -0.4
HERC1-205ENST00000559886 PDK1Q15118 436 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 SLC45A4Q5BKX6 768 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 RABGAP1LQ5R372 815 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 AFMIDQ63HM1 303 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 DARS2Q6PI48 645 aaKnown RBP12.53□□□□□ -0.4
HERC1-205ENST00000559886 ARID3BQ8IVW6 561 aaPredicted RBP12.53□□□□□ -0.4
HERC1-205ENST00000559886 NPAS3Q8IXF0 933 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 TP53INP2Q8IXH6 220 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 TRIM51Q9BSJ1 452 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 C10orf88Q9H8K7 445 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 CDH22Q9UJ99 828 aa12.53□□□□□ -0.4
HERC1-205ENST00000559886 C5orf42Q9H799 3197 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 HACD1B0YJ81 288 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 SCAMP3O14828 347 aaKnown RBP12.52□□□□□ -0.4
HERC1-205ENST00000559886 STIP1P31948 543 aaKnown RBP12.52□□□□□ -0.4
HERC1-205ENST00000559886 GALNT2Q10471 571 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 PPP1R7Q15435 360 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 KCTD19Q17RG1 926 aaPredicted RBP12.52□□□□□ -0.4
HERC1-205ENST00000559886 PRPF38BQ5VTL8 546 aaKnown RBP12.52□□□□□ -0.4
HERC1-205ENST00000559886 GSTA5Q7RTV2 222 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 ARHGAP12Q8IWW6 846 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 CFAP52Q8N1V2 620 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 UMODL1-AS1Q8N2C9 162 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 CPXM2Q8N436 756 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 CCDC33Q8N5R6 958 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 NETO2Q8NC67 525 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 RIN3Q8TB24 985 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 ZSCAN18Q8TBC5 510 aaPredicted RBP12.52□□□□□ -0.4
HERC1-205ENST00000559886 SEC14L1Q92503 715 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 RUBCNQ92622 972 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 QKIQ96PU8 341 aaKnown RBP eCLIP12.52□□□□□ -0.45e-11■■■□□ 17.6
HERC1-205ENST00000559886 PNKPQ96T60 521 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 HINFPQ9BQA5 517 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 ERP44Q9BS26 406 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 RAB17Q9H0T7 212 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 USP29Q9HBJ7 922 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 CLDND1Q9NY35 253 aa12.52□□□□□ -0.4
HERC1-205ENST00000559886 UTP11Q9Y3A2 253 aaKnown RBP12.52□□□□□ -0.4
HERC1-205ENST00000559886 ZFP37Q9Y6Q3 630 aaPredicted RBP12.52□□□□□ -0.4
HERC1-205ENST00000559886 DENND4AQ7Z401 1863 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 MYOFQ9NZM1 2061 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 CFAP69A5D8W1 941 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 ZSCAN5CA6NGD5 496 aaPredicted RBP12.52□□□□□ -0.41
HERC1-205ENST00000559886 SGK1O00141 431 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 TRDMT1O14717 391 aaKnown RBP12.52□□□□□ -0.41
HERC1-205ENST00000559886 PPP1R12AO14974 1030 aaPredicted RBP12.52□□□□□ -0.41
HERC1-205ENST00000559886 MX2P20592 715 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 IGFBP4P22692 258 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 LTBRP36941 435 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 RPS24P62847 133 aaKnown RBP12.52□□□□□ -0.41
HERC1-205ENST00000559886 GUCY2DQ02846 1103 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 USP4Q13107 963 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 PTK6Q13882 451 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 ZNF77Q15935 545 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 ATAT1Q5SQI0 421 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 TTC39BQ5VTQ0 682 aaPredicted RBP12.52□□□□□ -0.41
HERC1-205ENST00000559886 CES5AQ6NT32 575 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 B4GALNT4Q76KP1 1039 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 TFAP2DQ7Z6R9 452 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 CIR1Q86X95 450 aaPredicted RBP12.52□□□□□ -0.41
HERC1-205ENST00000559886 CDKL3Q8IVW4 592 aaPredicted RBP12.52□□□□□ -0.41
HERC1-205ENST00000559886 BBS7Q8IWZ6 715 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 TTC16Q8NEE8 873 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 TFB1MQ8WVM0 346 aaKnown RBP12.52□□□□□ -0.41
HERC1-205ENST00000559886 FGF13Q92913 245 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 LRCH3Q96II8 777 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 LGMNQ99538 433 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 PARD6BQ9BYG5 372 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 BRD8Q9H0E9 1235 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 NOL6Q9H6R4 1146 aaKnown RBP12.52□□□□□ -0.41
HERC1-205ENST00000559886 GDE1Q9NZC3 331 aa12.52□□□□□ -0.41
HERC1-205ENST00000559886 TUBBP07437 444 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 RBL1P28749 1068 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 CHKAP35790 457 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 MAPKAPK2P49137 400 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 SGSHP51688 502 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 NDST2P52849 883 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 GDF10P55107 478 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 CDH4P55283 916 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 PRKD1Q15139 912 aaPredicted RBP12.51□□□□□ -0.41
HERC1-205ENST00000559886 DUPD1Q68J44 220 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 WDR93Q6P2C0 686 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 CHST9Q7L1S5 443 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 FAM71DQ8N9W8 422 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 RSAD2Q8WXG1 361 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 HDAC11Q96DB2 347 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 PABPC5Q96DU9 382 aaKnown RBP12.51□□□□□ -0.41
HERC1-205ENST00000559886 RTP4Q96DX8 246 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 CELF6Q96J87 481 aaKnown RBP12.51□□□□□ -0.41
HERC1-205ENST00000559886 KIF9Q9HAQ2 790 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 EPB41L5Q9HCM4 733 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 GDF3Q9NR23 364 aa12.51□□□□□ -0.41
HERC1-205ENST00000559886 MYO18AQ92614 2054 aaKnown RBP12.51□□□□□ -0.41
HERC1-205ENST00000559886 A0A1B0GVM2 712 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms