RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 FSCBQ5H9T9 825 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 LRRC38Q5VT99 294 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 ANKS1BQ7Z6G8 1248 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 TFAP2DQ7Z6R9 452 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 KIAA0907Q7Z7F0 614 aaPredicted RBP22.32■■□□□ 1.16
SNX1-206ENST00000559389 NLRP14Q86W24 1093 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 CCDC117Q8IWD4 279 aaPredicted RBP22.32■■□□□ 1.16
SNX1-206ENST00000559389 LRRC57Q8N9N7 239 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 ABCB8Q9NUT2 735 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 GGA2Q9UJY4 613 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 PPP2R2CQ9Y2T4 447 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 ALG6Q9Y672 507 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 MUC22E2RYF6 1773 aaPredicted RBP22.31■■□□□ 1.16
SNX1-206ENST00000559389 FAM86C2PA6NEL3 165 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 MOCS3O95396 460 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 CHRM1P11229 460 aaPredicted RBP22.31■■□□□ 1.16
SNX1-206ENST00000559389 RHOQP17081 205 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 AOC1P19801 751 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 EPHB2P29323 1055 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 CD70P32970 193 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 NAP1L1P55209 391 aaKnown RBP22.31■■□□□ 1.16
SNX1-206ENST00000559389 LRRC32Q14392 662 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 FBXO43Q4G163 708 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 PPP6R3Q5H9R7 873 aaPredicted RBP22.31■■□□□ 1.16
SNX1-206ENST00000559389 DGKKQ5KSL6 1271 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 RWDD4Q6NW29 188 aaKnown RBP22.31■■□□□ 1.16
SNX1-206ENST00000559389 DAAM2Q86T65 1068 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 OR52K2Q8NGK3 314 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 FAM71BQ8TC56 605 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 WFIKKN2Q8TEU8 576 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 RETREG1Q9H6L5 497 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 PCDH18Q9HCL0 1135 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 RBM12Q9NTZ6 932 aaKnown RBP22.31■■□□□ 1.16
SNX1-206ENST00000559389 TMEM248Q9NWD8 314 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 TBC1D30Q9Y2I9 924 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 CAPN6Q9Y6Q1 641 aa22.31■■□□□ 1.16
SNX1-206ENST00000559389 BDP1A6H8Y1 2624 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.3■■□□□ 1.16
SNX1-206ENST00000559389 PRRT4C9JH25 899 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 K7EQS6 105 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 EEF2KO00418 725 aaKnown RBP22.3■■□□□ 1.16
SNX1-206ENST00000559389 STK25O00506 426 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 FGF10O15520 208 aaPredicted RBP22.3■■□□□ 1.16
SNX1-206ENST00000559389 GOT1P17174 413 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 ARSEP51690 589 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 ZNF177Q13360 481 aaPredicted RBP22.3■■□□□ 1.16
SNX1-206ENST00000559389 EIF4HQ15056 248 aaKnown RBP22.3■■□□□ 1.16
SNX1-206ENST00000559389 FUT11Q495W5 492 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 RFX8Q6ZV50 586 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 RHOT1Q8IXI2 618 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 AHI1Q8N157 1196 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 RNF10Q8N5U6 811 aaKnown RBP22.3■■□□□ 1.16
SNX1-206ENST00000559389 PBXIP1Q96AQ6 731 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 CLDN23Q96B33 292 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 KLHL11Q9NVR0 708 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 KIAA1522Q9P206 1035 aaPredicted RBP22.3■■□□□ 1.16
SNX1-206ENST00000559389 SIT1Q9Y3P8 196 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 F5P12259 2224 aa22.3■■□□□ 1.16
SNX1-206ENST00000559389 TBC1D3BA6NDS4 549 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 H3BRJ5 948 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 NCAM2O15394 837 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 PSTPIP1O43586 416 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 CSKP41240 450 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 TNFRSF4P43489 277 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 MAPKAPK2P49137 400 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 CLCN5P51795 746 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 CDH6P55285 790 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 OXCT1P55809 520 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 ATP13A4Q4VNC1 1196 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 NUDT18Q6ZVK8 323 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 SETD3Q86TU7 594 aaPredicted RBP22.29■■□□□ 1.16
SNX1-206ENST00000559389 FBXL6Q8N531 539 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 RTL3Q8N8U3 475 aaKnown RBP22.29■■□□□ 1.16
SNX1-206ENST00000559389 TSC1Q92574 1164 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 CATSPERBQ9H7T0 1116 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 CWC15Q9P013 229 aaKnown RBP22.29■■□□□ 1.16
SNX1-206ENST00000559389 RCOR3Q9P2K3 495 aaPredicted RBP22.29■■□□□ 1.16
SNX1-206ENST00000559389 GUCA1BQ9UMX6 200 aa22.29■■□□□ 1.16
SNX1-206ENST00000559389 WASH4PA8MWX3 477 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 DLL1O00548 723 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 GPR37L1O60883 481 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 RHOCP08134 193 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 OR1E1P30953 314 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 ARL4AP40617 200 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 RPS9P46781 194 aaKnown RBP22.28■■□□□ 1.16
SNX1-206ENST00000559389 HCAR3P49019 387 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 SLC12A1Q13621 1099 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 DPYSQ14117 519 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 KRT81Q14533 505 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 DMC1Q14565 340 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 C6orf118Q5T5N4 469 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 TMEM215Q68D42 235 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 Q6ZS52 159 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 ADIPOR2Q86V24 386 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 SYNPOQ8N3V7 929 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 KIAA1524Q8TCG1 905 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 CSPG4P5Q96PW8 444 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 CHRDQ9H2X0 955 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 LMAN1LQ9HAT1 526 aa22.28■■□□□ 1.16
SNX1-206ENST00000559389 LZTFL1Q9NQ48 299 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms