RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 RGS21Q2M5E4 152 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 HIPK4Q8NE63 616 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 CPT1BQ92523 772 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 ZNF597Q96LX8 424 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 DOK1Q99704 481 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 EBF4Q9BQW3 602 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 DRC3Q9H069 523 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 GBA3Q9H227 469 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 SAGE1Q9NXZ1 904 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 DOLKQ9UPQ8 538 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 SLC30A1Q9Y6M5 507 aa11.15□□□□□ -0.62
USP3-206ENST00000558157 PRSS51A0A1B0GVH4 220 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 TRIM64BA6NI03 449 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 SGK1O00141 431 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 FKTNO75072 461 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 ZBTB11O95625 1053 aaPredicted RBP11.15□□□□□ -0.63
USP3-206ENST00000558157 KITP10721 976 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 CRHR1P34998 444 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 NSFP46459 744 aaKnown RBP11.15□□□□□ -0.63
USP3-206ENST00000558157 IGBP1P78318 339 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 DLG4P78352 724 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 BEX3Q00994 111 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 CACNB2Q08289 660 aaPredicted RBP11.15□□□□□ -0.63
USP3-206ENST00000558157 KCTD21Q4G0X4 260 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 MSS51Q4VC12 460 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 C1orf220Q5T0J3 134 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 C16orf87Q6PH81 154 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 PAOXQ6QHF9 649 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 C16orf89Q6UX73 402 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 TRIM72Q6ZMU5 477 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 DENND5BQ6ZUT9 1274 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 HAUS6Q7Z4H7 955 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 CARM1Q86X55 608 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 LRRC71Q8N4P6 559 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 SLC35B2Q8TB61 432 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 ZNF296Q8WUU4 475 aaPredicted RBP11.15□□□□□ -0.63
USP3-206ENST00000558157 TRUB1Q8WWH5 349 aaKnown RBP11.15□□□□□ -0.63
USP3-206ENST00000558157 DHX38Q92620 1227 aaKnown RBP11.15□□□□□ -0.63
USP3-206ENST00000558157 RMND5BQ96G75 393 aaPredicted RBP11.15□□□□□ -0.63
USP3-206ENST00000558157 CCDC138Q96M89 665 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 AP5M1Q9H0R1 490 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 TPK1Q9H3S4 243 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 CLK4Q9HAZ1 481 aaKnown RBP11.15□□□□□ -0.63
USP3-206ENST00000558157 KMT5AQ9NQR1 393 aa11.15□□□□□ -0.63
USP3-206ENST00000558157 TRNAU1APQ9NX07 287 aaKnown RBP11.15□□□□□ -0.63
USP3-206ENST00000558157 A0A087WXM4 84 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 TCRBV9S1A1TA0A576 114 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 H3BRB1 525 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 INSRRP14616 1297 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 ETS1P14921 441 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 CD58P19256 250 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 ARL2P36404 184 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 CDKL1Q00532 357 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 GK3PQ14409 553 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 ANKDD1AQ495B1 522 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 ITPRIPL1Q6GPH6 555 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 CDHR3Q6ZTQ4 885 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 ZNF354CQ86Y25 554 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 TMEM161BQ8NDZ6 487 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 HELQQ8TDG4 1101 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 KBTBD7Q8WVZ9 684 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 NT5C1BQ96P26 610 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 WDR83Q9BRX9 315 aaKnown RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 FRMD8Q9BZ67 464 aaPredicted RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 ST6GALNAC4Q9H4F1 302 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 TUT1Q9H6E5 874 aaKnown RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 CYP4F11Q9HBI6 524 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 MARCOQ9UEW3 520 aaPredicted RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 ARHGEF37A1IGU5 675 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 MYADML2A6NDP7 307 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 TRIM49D1C9J1S8 452 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 TRDMT1O14717 391 aaKnown RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 BANF1O75531 89 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 PRKAR2AP13861 404 aaKnown RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 CCDC130P13994 396 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 HOXD10P28358 340 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 CPT1AP50416 773 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 MRPS5P82675 430 aaKnown RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 GTF2BQ00403 316 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 ACAP1Q15027 740 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 TFDP3Q5H9I0 405 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 ZNF484Q5JVG2 852 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 MON1BQ7L1V2 547 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 XXYLT1Q8NBI6 393 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 PCYOX1LQ8NBM8 494 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 MINDY2Q8NBR6 621 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 TFB1MQ8WVM0 346 aaKnown RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 C12orf43Q96C57 262 aaKnown RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 MECRQ9BV79 373 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 LIN28AQ9H9Z2 209 aaKnown RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 DDX56Q9NY93 547 aaKnown RBP11.14□□□□□ -0.63
USP3-206ENST00000558157 TMEM9Q9P0T7 183 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 IP6K2Q9UHH9 426 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 Q9Y3F1 56 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 HTTP42858 3142 aa11.14□□□□□ -0.63
USP3-206ENST00000558157 IGKV6-21A0A0C4DH24 114 aa11.13□□□□□ -0.63
USP3-206ENST00000558157 GOLGA8SH3BPF8 625 aa11.13□□□□□ -0.63
USP3-206ENST00000558157 GOLGA8MH3BSY2 632 aa11.13□□□□□ -0.63
USP3-206ENST00000558157 PSMD12O00232 456 aaPredicted RBP11.13□□□□□ -0.63
USP3-206ENST00000558157 KPNA4O00629 521 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms