RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	LSM1	O15116	133 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TIMM44	O43615	452 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	CLASP2	O75122	1294 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	JAK1	P23458	1154 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	PSMB9	P28065	219 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	CLCN3	P51790	818 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	NR1H2	P55055	460 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	PSME3	P61289	254 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SFSWAP	Q12872	951 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	MPP3	Q13368	585 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	FAM83E	Q2M2I3	478 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	RGS21	Q2M5E4	152 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	CGB2	Q6NT52	195 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	APOBEC3H	Q6NTF7	200 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	FOXR2	Q6PJQ5	311 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SZRD1	Q7Z422	152 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SYTL1	Q8IYJ3	562 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	DSEL	Q8IZU8	1212 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	BBS5	Q8N3I7	341 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	OR5B17	Q8NGF7	314 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	DGCR14	Q96DF8	476 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	VCPIP1	Q96JH7	1222 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	RIBC2	Q9H4K1	309 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF395	Q9H8N7	513 aa	Predicted RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	QTRT2	Q9H974	415 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	INPP4B	O15327	924 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	CLOCK	O15516	846 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZBTB11	O95625	1053 aa	Predicted RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TXN	P10599	105 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ALOX15	P16050	662 aa	Predicted RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ACADSB	P45954	432 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	IREB2	P48200	963 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	PLK1	P53350	603 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	RAD51	Q06609	339 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	GRIK3	Q13003	919 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	CDC16	Q13042	620 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	KCNT2	Q6UVM3	1135 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	RNF19B	Q6ZMZ0	732 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ENDOV	Q8N8Q3	282 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	PIWIL2	Q8TC59	973 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	URGCP	Q8TCY9	931 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TRAPPC12	Q8WVT3	735 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	NRG4	Q8WWG1	115 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	PABPC5	Q96DU9	382 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	FAR2	Q96K12	515 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	WDR55	Q9H6Y2	383 aa	Predicted RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	C17orf75	Q9HAS0	396 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TIMMDC1	Q9NPL8	285 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	PNPLA3	Q9NST1	481 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	EURL	Q9NYK6	297 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	RPL26L1	Q9UNX3	145 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	BTRC	Q9Y297	605 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	FAM95C	A0A1B0GW59	222 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	KCNU1	A8MYU2	1149 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SORBS2	O94875	1100 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	APOA1	P02647	267 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ITGA2B	P08514	1039 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	NFIC	P08651	508 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	RARB	P10826	455 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	MMP14	P50281	582 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	XIAP	P98170	497 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	PRKAA1	Q13131	559 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	NAB1	Q13506	487 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	DPYS	Q14117	519 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	STIL	Q15468	1287 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC9A4	Q6AI14	798 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TWF2	Q6IBS0	349 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	NAPEPLD	Q6IQ20	393 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	PACS1	Q6VY07	963 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	CMC1	Q7Z7K0	106 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	LINC00523	Q86TU6	105 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SPPL2C	Q8IUH8	684 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	FLCN	Q8NFG4	579 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SHC3	Q92529	594 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	RNF145	Q96MT1	663 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	MAGEB5	Q9BZ81	275 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	MID1IP1	Q9NPA3	183 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	GALNT8	Q9NY28	637 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005		A0A1B0GUL6	1792 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SMIM31	A0A1B0GVY4	71 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TRIM43B	A6NCK2	446 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	CXorf49	A8MYA2	514 aa	Predicted RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	KATNA1	O75449	491 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	MTA2	O94776	668 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	FKBP9	O95302	570 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ASL	P04424	464 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	CDKN2B	P42772	138 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	NRL	P54845	237 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC6A3	Q01959	620 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	AASDH	Q4L235	1098 aa	Predicted RBP	5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	MSS51	Q4VC12	460 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	BOLA3	Q53S33	107 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	C6orf10	Q5SRN2	563 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TMEM26	Q6ZUK4	368 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	FKBP9P1	Q75LS8	142 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ADGRF2	Q8IZF7	708 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF781	Q8N8C0	355 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	FAM156A	Q8NDB6	213 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	RDM1	Q8NG50	284 aa		5.08	□□□□□ -1.6
SYNE2-223	ENST00000557005	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	5.08	□□□□□ -1.6

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