RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.12□□□□□ -0.156e-7■■□□□ 14.2
SHMT2-226ENST00000556825 GPBP1L1Q9HC44 474 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-226ENST00000556825 CNNM1Q9NRU3 951 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 CHST7Q9NS84 486 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 MRPL39Q9NYK5 338 aaKnown RBP14.12□□□□□ -0.15
SHMT2-226ENST00000556825 LAMB4A4D0S4 1761 aa14.12□□□□□ -0.15
SHMT2-226ENST00000556825 MYH14Q7Z406 1995 aaKnown RBP14.12□□□□□ -0.15
SHMT2-226ENST00000556825 A0A0G2JMP0 313 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 MYMKA6NI61 221 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 LAD1O00515 517 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 GSNP06396 782 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 MATN1P21941 496 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 ARNTP27540 789 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 FAAP100Q0VG06 881 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 FLOT2Q14254 428 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 ERAP2Q6P179 960 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 GADL1Q6ZQY3 521 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 KCTD8Q6ZWB6 473 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 UNC45BQ8IWX7 931 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 GALNT12Q8IXK2 581 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 ZCCHC7Q8N3Z6 543 aaKnown RBP14.11□□□□□ -0.15
SHMT2-226ENST00000556825 SLC22A8Q8TCC7 542 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 SLC10A4Q96EP9 437 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 APOPT1Q96IL0 206 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 BTBD6Q96KE9 485 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 SERPINI1Q99574 410 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 POLE4Q9NR33 117 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 SERPINA10Q9UK55 444 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 RTL9Q8NET4 1388 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 A0A0B4J269 797 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 CENPXA8MT69 81 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 MEN1O00255 615 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 HTRA2O43464 458 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-226ENST00000556825 USP12O75317 370 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 FGF18O76093 207 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 STAT1P42224 750 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 COASYQ13057 564 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 TUBB3Q13509 450 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 ESCO2Q56NI9 601 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 FSCBQ5H9T9 825 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 ATG14Q6ZNE5 492 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 CRLF3Q8IUI8 442 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 TFB1MQ8WVM0 346 aaKnown RBP14.11□□□□□ -0.15
SHMT2-226ENST00000556825 INTS12Q96CB8 462 aaKnown RBP14.11□□□□□ -0.15
SHMT2-226ENST00000556825 KLF6Q99612 283 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-226ENST00000556825 RPRD1BQ9NQG5 326 aaKnown RBP14.11□□□□□ -0.15
SHMT2-226ENST00000556825 TOR4AQ9NXH8 423 aa14.11□□□□□ -0.15
SHMT2-226ENST00000556825 AJAP1Q9UKB5 411 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-226ENST00000556825 PRPF19Q9UMS4 504 aaKnown RBP14.11□□□□□ -0.15
SHMT2-226ENST00000556825 A0A0X1KG70 313 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 CLDN3O15551 220 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 AKAP10O43572 662 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 ENTPD3O75355 529 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 KCNK2O95069 426 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 CSTF2P33240 577 aaKnown RBP eCLIP14.1□□□□□ -0.15
SHMT2-226ENST00000556825 ADD2P35612 726 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 HTR2BP41595 481 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 GPR85P60893 370 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 GHRHRQ02643 423 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 BST1Q10588 318 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 CEP55Q53EZ4 464 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 SDE2Q6IQ49 451 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 NEK8Q86SG6 692 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 MFSD4AQ8N468 514 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 TFAP2CQ92754 450 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 EBF4Q9BQW3 602 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 DHRS4Q9BTZ2 278 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-226ENST00000556825 NYXQ9GZU5 481 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 TRPV6Q9H1D0 765 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 DDX28Q9NUL7 540 aaKnown RBP14.1□□□□□ -0.15
SHMT2-226ENST00000556825 PCDHAC2Q9Y5I4 1007 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 ATRNO75882 1429 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 C16orf96A6NNT2 1141 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 PLK4O00444 970 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 DAB1O75553 588 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 SLITRK5O94991 958 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 KITP10721 976 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 IL6STP40189 918 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-226ENST00000556825 NAB1Q13506 487 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 NKX1-1Q15270 411 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-226ENST00000556825 TAF12Q16514 161 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 YIF1BQ5BJH7 314 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 NHSL2Q5HYW2 709 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 ATAD3CQ5T2N8 411 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 FAM83AQ86UY5 434 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-226ENST00000556825 HDAC2Q92769 488 aaKnown RBP14.1□□□□□ -0.15
SHMT2-226ENST00000556825 TMEM80Q96HE8 168 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 TSNARE1Q96NA8 513 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 SYT11Q9BT88 431 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 IDI2Q9BXS1 227 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 SIX2Q9NPC8 291 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 HOMER2Q9NSB8 354 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 GGA3Q9NZ52 723 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 NPAP1Q9NZP6 1156 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 TCAF1Q9Y4C2 921 aa14.1□□□□□ -0.15
SHMT2-226ENST00000556825 ISPDA4D126 451 aa14.09□□□□□ -0.15
SHMT2-226ENST00000556825 PI4K2BG5E9Z4 385 aa14.09□□□□□ -0.15
SHMT2-226ENST00000556825 EML1O00423 815 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms