RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 COPG1Q9Y678 874 aaKnown RBP4.58□□□□□ -1.68
VPS29-205ENST00000548539 CLIC1O00299 241 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 HNRNPRO43390 633 aaKnown RBP4.57□□□□□ -1.68
VPS29-205ENST00000548539 HNRNPCP07910 306 aaKnown RBP eCLIP4.57□□□□□ -1.68
VPS29-205ENST00000548539 CYP3A4P08684 503 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 CYP2D6P10635 497 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 GPD1P21695 349 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 NDUFS1P28331 727 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 DUSP1P28562 367 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 PNPLA4P41247 253 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 STAT6P42226 847 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 SHC2P98077 582 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 CDK18Q07002 472 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 KCNB1Q14721 858 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 CNGA3Q16281 694 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 TMEM65Q6PI78 240 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 DCDC5Q6ZRR9 648 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 ZNF804AQ7Z570 1209 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 AMIGO2Q86SJ2 522 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 LINC01465Q8N7H1 131 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 PCYOX1LQ8NBM8 494 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 ST8SIA4Q92187 359 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 ZUFSPQ96AP4 578 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 KAZALD1Q96I82 304 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 GPR78Q96P69 363 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 TIMP4Q99727 224 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 OSBPL5Q9H0X9 879 aaPredicted RBP4.57□□□□□ -1.68
VPS29-205ENST00000548539 ACAD9Q9H845 621 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 CPNE5Q9HCH3 593 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 ASNSD1Q9NWL6 643 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 SH3BP4Q9P0V3 963 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 AFG3L2Q9Y4W6 797 aa4.57□□□□□ -1.68
VPS29-205ENST00000548539 HEMK1Q9Y5R4 338 aaPredicted RBP4.57□□□□□ -1.68
VPS29-205ENST00000548539 LMTK3Q96Q04 1460 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 GCOM1H8Y6P7 765 aaPredicted RBP4.56□□□□□ -1.68
VPS29-205ENST00000548539 PRYO14603 147 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 ANP32CO43423 234 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 TSPAN3O60637 253 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 GCATO75600 419 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 TBX18O95935 607 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 MT-CO3P00414 261 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 PGM1P36871 562 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 SLC37A1P57057 533 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 VAMP2P63027 116 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 B4GALNT1Q00973 533 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.56□□□□□ -1.68
VPS29-205ENST00000548539 GALNT2Q10471 571 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 RUNDC3AQ59EK9 446 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 CBWD5Q5RIA9 395 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 FAAH2Q6GMR7 532 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 ANO7Q6IWH7 933 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 SERPINA13PQ6UXR4 307 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 SLC39A5Q6ZMH5 540 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 TRIM72Q6ZMU5 477 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 USP38Q8NB14 1042 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 TBC1D5Q92609 795 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 SARAFQ96BY9 339 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 DAZAP1Q96EP5 407 aaKnown RBP4.56□□□□□ -1.68
VPS29-205ENST00000548539 PPP1R10Q96QC0 940 aaKnown RBP4.56□□□□□ -1.68
VPS29-205ENST00000548539 HDHD5Q9BXW7 423 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 AGXT2Q9BYV1 514 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 PAIP1Q9H074 479 aaKnown RBP4.56□□□□□ -1.68
VPS29-205ENST00000548539 UNC45AQ9H3U1 944 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 STN1Q9H668 368 aaKnown RBP4.56□□□□□ -1.68
VPS29-205ENST00000548539 IL21RQ9HBE5 538 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 IRAK4Q9NWZ3 460 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 MAP3K20Q9NYL2 800 aaKnown RBP4.56□□□□□ -1.68
VPS29-205ENST00000548539 TBX20Q9UMR3 447 aa4.56□□□□□ -1.68
VPS29-205ENST00000548539 ZNF804BA4D1E1 1349 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 CYP3A7-CYP3A51PA0A087WV96 503 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 SAC3D1A6NKF1 404 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 C3orf70A6NLC5 250 aaPredicted RBP4.55□□□□□ -1.68
VPS29-205ENST00000548539 C16orf96A6NNT2 1141 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 TTC34A8MYJ7 566 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 PRKCGP05129 697 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 IFIT1P09914 478 aaKnown RBP4.55□□□□□ -1.68
VPS29-205ENST00000548539 ALDOCP09972 364 aaKnown RBP4.55□□□□□ -1.68
VPS29-205ENST00000548539 WEE2P0C1S8 567 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 ATF7P17544 494 aaPredicted RBP4.55□□□□□ -1.68
VPS29-205ENST00000548539 CYP3A7P24462 503 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 GGT5P36269 586 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 SLC14A1Q13336 389 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 KPNB1Q14974 876 aaKnown RBP4.55□□□□□ -1.68
VPS29-205ENST00000548539 NFIL3Q16649 462 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 MTX3Q5HYI7 312 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 WDR45BQ5MNZ6 344 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 CC2D1BQ5T0F9 858 aaKnown RBP4.55□□□□□ -1.68
VPS29-205ENST00000548539 LCE1EQ5T753 118 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 C11orf87Q6NUJ2 197 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 CEP85Q6P2H3 762 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 LAS2Q8IYD9 372 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 VPS52Q8N1B4 723 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 GALNT4Q8N4A0 578 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 SRFBP1Q8NEF9 429 aaKnown RBP4.55□□□□□ -1.68
VPS29-205ENST00000548539 CCDC17Q96LX7 622 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 HTATIP2Q9BUP3 242 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 CTDSP1Q9GZU7 261 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 MROH8Q9H579 483 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 PREBQ9HCU5 417 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 THAP1Q9NVV9 213 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms