RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 C5P01031 1676 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 ETS2P15036 469 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 WARSP23381 471 aaKnown RBP13.05□□□□□ -0.32
PTCH1-212ENST00000546744 PRIM2P49643 509 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 CYP24A1Q07973 514 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 KIZQ2M2Z5 673 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 ANGEL2Q5VTE6 544 aaKnown RBP13.05□□□□□ -0.32
PTCH1-212ENST00000546744 PKN3Q6P5Z2 889 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 RAB2BQ8WUD1 216 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 AP3S1Q92572 193 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 ZCWPW1Q9H0M4 648 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 GNPTGQ9UJJ9 305 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 ZNF180Q9UJW8 692 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 VANGL2Q9ULK5 521 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 A0A087X0B3 334 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 MSH4O15457 936 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 CCNB1P14635 433 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 RPL22P35268 128 aaKnown RBP13.05□□□□□ -0.32
PTCH1-212ENST00000546744 COX10Q12887 443 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 NRF1Q16656 503 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 SYTL1Q8IYJ3 562 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 EMC1Q8N766 993 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 C12orf50Q8NA57 414 aaPredicted RBP13.05□□□□□ -0.32
PTCH1-212ENST00000546744 BHMTQ93088 406 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 KCTD10Q9H3F6 313 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 RNF112Q9ULX5 631 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 TMA7Q9Y2S6 64 aaKnown RBP13.05□□□□□ -0.32
PTCH1-212ENST00000546744 GJA3Q9Y6H8 435 aa13.05□□□□□ -0.32
PTCH1-212ENST00000546744 AFDNP55196 1824 aaKnown RBP13.04□□□□□ -0.32
PTCH1-212ENST00000546744 H0YC42 278 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 PDLIM1O00151 329 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 LIASO43766 372 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 GUCY1B2O75343 617 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 GRIK3Q13003 919 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 MKRN4PQ13434 485 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-212ENST00000546744 DPYSL3Q14195 570 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 ZFP69Q49AA0 526 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 EMC10Q5UCC4 262 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 GPR107Q5VW38 600 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 C6orf89Q6UWU4 347 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 MFSD7Q6UXD7 560 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 WDR49Q8IV35 697 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 CNTD1Q8N815 330 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 RNF149Q8NC42 400 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 IPMKQ8NFU5 416 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 CENPIQ92674 756 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-212ENST00000546744 GPRASP2Q96D09 838 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 KATNAL1Q9BW62 490 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 TRIM17Q9Y577 477 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 V9GYQ6 96 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 ROBO3Q96MS0 1386 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 DHRS12A0PJE2 317 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 ENTPD3O75355 529 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 NDUFB10O96000 172 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 CCNE2O96020 404 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 LCP1P13796 627 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 HARS2P49590 506 aaKnown RBP13.04□□□□□ -0.32
PTCH1-212ENST00000546744 POLD3Q15054 466 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-212ENST00000546744 ANKS6Q68DC2 871 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 LMBRD2Q68DH5 695 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-212ENST00000546744 SV2AQ7L0J3 742 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 SLC47A2Q86VL8 602 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 APPL2Q8NEU8 664 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 SPIRE2Q8WWL2 714 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 PNMA5Q96PV4 448 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 SLCO1B3Q9NPD5 702 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 LATS2Q9NRM7 1088 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 BLOC1S4Q9NUP1 217 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 TBC1D13Q9NVG8 400 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 LEF1Q9UJU2 399 aaPredicted RBP13.04□□□□□ -0.32
PTCH1-212ENST00000546744 CCDC162PA2VCL2 907 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 FAM220BPB1ANY3 271 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 F8W810 466 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 LBPP18428 481 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 NAMPTP43490 491 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 HADHBP55084 474 aaKnown RBP13.04□□□□□ -0.32
PTCH1-212ENST00000546744 ZNF605Q86T29 641 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 TMEM110Q86TL2 294 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 ZNF276Q8N554 614 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 EPS8L1Q8TE68 723 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 ITPKCQ96DU7 683 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 EHD1Q9H4M9 534 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 CD320Q9NPF0 282 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 ARL8BQ9NVJ2 186 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 TRNAU1APQ9NX07 287 aaKnown RBP13.04□□□□□ -0.32
PTCH1-212ENST00000546744 DDX43Q9NXZ2 648 aaKnown RBP13.04□□□□□ -0.32
PTCH1-212ENST00000546744 TMEM216Q9P0N5 145 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 TMEM9Q9P0T7 183 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 PHF11Q9UIL8 331 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 FADS3Q9Y5Q0 445 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 FAM95CA0A1B0GW59 222 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 HS6ST1O60243 411 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 SIN3BO75182 1162 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 PIGNO95427 931 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 MMP10P09238 476 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 PCSK1P29120 753 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 PERM1Q5SV97 790 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 BBS12Q6ZW61 710 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 SZRD1Q7Z422 152 aa13.04□□□□□ -0.32
PTCH1-212ENST00000546744 LRRC17Q8N6Y2 441 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms