RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 TSC1Q92574 1164 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 KRT35Q92764 455 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 SHDQ96IW2 340 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 PNKPQ96T60 521 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 P2RY13Q9BPV8 354 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 CALN1Q9BXU9 219 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 TMEM248Q9NWD8 314 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 DONSONQ9NYP3 566 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 CLEC4EQ9ULY5 219 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 ZRANB2O95218 330 aaKnown RBP eCLIP17.62■□□□□ 0.41
LIG1-204ENST00000542460 KRT1P04264 644 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 CD48P09326 243 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 CISD3P0C7P0 127 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 ALADP13716 330 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 IL4RP24394 825 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 MSNP26038 577 aaKnown RBP17.62■□□□□ 0.41
LIG1-204ENST00000542460 OR1E1P30953 314 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 MARCKSL1P49006 195 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 PEX5P50542 639 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 GALK1P51570 392 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 OXCT1P55809 520 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 RWDD2BP57060 319 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 MEI1Q5TIA1 1274 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 TXNDC11Q6PKC3 985 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 TFAP2DQ7Z6R9 452 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 NLRP14Q86W24 1093 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 VSIG1Q86XK7 387 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 SUGP1Q8IWZ8 645 aaKnown RBP17.62■□□□□ 0.41
LIG1-204ENST00000542460 RCOR2Q8IZ40 523 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 EXD1Q8NHP7 514 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 EDAQ92838 391 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 HES6Q96HZ4 224 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 CSPG4P5Q96PW8 444 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 ZNF670Q9BS34 389 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 ZNF212Q9UDV6 495 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 PACSIN2Q9UNF0 486 aaPredicted RBP17.62■□□□□ 0.41
LIG1-204ENST00000542460 TBC1D30Q9Y2I9 924 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 ZKSCAN5Q9Y2L8 839 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 SLC27A6Q9Y2P4 619 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 KRBA1A5PL33 1030 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 WASH4PA8MWX3 477 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 ZNF487B1APH4 448 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 PI4K2BG5E9Z4 385 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 COL9A1P20849 921 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 MAPKAPK2P49137 400 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 DPYSQ14117 519 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 ZNF569Q5MCW4 686 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 C6orf118Q5T5N4 469 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 GRAMD4Q6IC98 578 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 ZNF852Q6ZMS4 543 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 NUDT18Q6ZVK8 323 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 SETD3Q86TU7 594 aaPredicted RBP17.61■□□□□ 0.41
LIG1-204ENST00000542460 SIX5Q8N196 739 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 RTL3Q8N8U3 475 aaKnown RBP17.61■□□□□ 0.41
LIG1-204ENST00000542460 FAM3CQ92520 227 aa17.61■□□□□ 0.41
LIG1-204ENST00000542460 RNF25Q96BH1 459 aaPredicted RBP17.61■□□□□ 0.41
LIG1-204ENST00000542460 KIAA1522Q9P206 1035 aaPredicted RBP17.61■□□□□ 0.41
LIG1-204ENST00000542460 SHISA7A6NL88 538 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 C3orf70A6NLC5 250 aaPredicted RBP17.6■□□□□ 0.41
LIG1-204ENST00000542460 ERCC2P18074 760 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 HLA-FP30511 346 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 GRIA2P42262 883 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 STARD6P59095 220 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 SIGLEC14Q08ET2 396 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 MMRN1Q13201 1228 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 ANKRD20A8PQ5CZ79 823 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 FSCBQ5H9T9 825 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 NAIF1Q69YI7 327 aaPredicted RBP17.6■□□□□ 0.41
LIG1-204ENST00000542460 ASTLQ6HA08 431 aaPredicted RBP17.6■□□□□ 0.41
LIG1-204ENST00000542460 PHTF2Q8N3S3 785 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 WFDC5Q8TCV5 224 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 ALG3Q92685 438 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 FAF2Q96CS3 445 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 RBM41Q96IZ5 413 aaKnown RBP17.6■□□□□ 0.41
LIG1-204ENST00000542460 ARHGEF4Q9NR80 690 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 ABCB8Q9NUT2 735 aa17.6■□□□□ 0.41
LIG1-204ENST00000542460 COL4A2P08572 1712 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 TICRRQ7Z2Z1 1910 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 A0A0A0MRY4 1105 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 TRIM24O15164 1050 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 DDX3YO15523 660 aaKnown RBP17.59■□□□□ 0.41
LIG1-204ENST00000542460 KAT7O95251 611 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 AMPD1P23109 780 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 SLC12A1Q13621 1099 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 PON2Q15165 354 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 RPS6KA1Q15418 735 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 TMEM196Q5HYL7 178 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 CXorf57Q6NSI4 855 aaKnown RBP17.59■□□□□ 0.41
LIG1-204ENST00000542460 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.59■□□□□ 0.41
LIG1-204ENST00000542460 FBRSL1Q9HCM7 1045 aaKnown RBP17.59■□□□□ 0.41
LIG1-204ENST00000542460 DNAI1Q9UI46 699 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 GGA2Q9UJY4 613 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 MRPS17Q9Y2R5 130 aaKnown RBP17.59■□□□□ 0.41
LIG1-204ENST00000542460 JRKLQ9Y4A0 524 aa17.59■□□□□ 0.41
LIG1-204ENST00000542460 ILVBLA1L0T0 632 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 TBC1D3BA6NDS4 549 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 APODP05090 189 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 RHOCP08134 193 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 PABPC1P11940 636 aaKnown RBP17.58■□□□□ 0.41
LIG1-204ENST00000542460 DRD1P21728 446 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms