RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 SPATA20Q8TB22 786 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 GANCQ8TET4 914 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 RPL10LQ96L21 214 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 NT5C1BQ96P26 610 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 SCAND2PQ9GZW5 306 aaPredicted RBP16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 ACP6Q9NPH0 428 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 SUN2Q9UH99 717 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 VILLO15195 856 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 IRAK2O43187 625 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 LUC7L3O95232 432 aaKnown RBP16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 RPL34P49207 117 aaKnown RBP16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 ADPRHP54922 357 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 RACK1P63244 317 aaKnown RBP16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 SUZ12Q15022 739 aaKnown RBP16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 RAP1GAP2Q684P5 730 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 UNC45BQ8IWX7 931 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 STK40Q8N2I9 435 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 SAP25Q8TEE9 199 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 GOLGA1Q92805 767 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 AZIN2Q96A70 460 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 TSG101Q99816 390 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 SCUBE2Q9NQ36 999 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 FTSJ1Q9UET6 329 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 ADAMTS1Q9UHI8 967 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 KIAA1257Q9ULG3 409 aa16.01■□□□□ 0.15
CLSTN3-213ENST00000541953 ATMQ13315 3056 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 ARID1BQ8NFD5 2236 aaPredicted RBP16■□□□□ 0.15
CLSTN3-213ENST00000541953 MGAQ8IWI9 3026 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 ITIH6Q6UXX5 1313 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 BMP6P22004 513 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 SLC8A1P32418 973 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 DRD3P35462 400 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 GPD2P43304 727 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 IRAK1P51617 712 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 LRRC63Q05C16 580 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 CDH18Q13634 790 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 TAF5Q15542 800 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 ZC3H12AQ5D1E8 599 aaKnown RBP16■□□□□ 0.15
CLSTN3-213ENST00000541953 LGI2Q8N0V4 545 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 GALNT15Q8N3T1 639 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 PTPRN2Q92932 1015 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 ELF4Q99607 663 aaPredicted RBP16■□□□□ 0.15
CLSTN3-213ENST00000541953 ACE2Q9BYF1 805 aaPredicted RBP16■□□□□ 0.15
CLSTN3-213ENST00000541953 TLR6Q9Y2C9 796 aa16■□□□□ 0.15
CLSTN3-213ENST00000541953 ASXL3Q9C0F0 2248 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 ENC1O14682 589 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 TLX3O43711 291 aaPredicted RBP15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 IGLV3-25P01717 112 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 ASLP04424 464 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 ITPKBP27987 946 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 MZF1P28698 734 aaPredicted RBP15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 C21orf59P57076 290 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 ST8SIA6P61647 398 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 BNIP3Q12983 259 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 ARID5BQ14865 1188 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 TTI2Q6NXR4 508 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 CHSY1Q86X52 802 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 SPATS2Q86XZ4 545 aaKnown RBP15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 OR52K2Q8NGK3 314 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 OR2T34Q8NGX1 318 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 FAM149B1Q96BN6 582 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 HSFY1Q96LI6 401 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 SERPINB11Q96P15 392 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 DCBLD2Q96PD2 775 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 GSDMAQ96QA5 445 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 ST7Q9NRC1 585 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 AASDHPPTQ9NRN7 309 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 RMND1Q9NWS8 449 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 MAN1B1Q9UKM7 699 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 SARDHQ9UL12 918 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 NCKAP1Q9Y2A7 1128 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 CFAP46Q8IYW2 2715 aa15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 SETXQ7Z333 2677 aaKnown RBP15.99■□□□□ 0.15
CLSTN3-213ENST00000541953 A0A087WV48 116 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 EDDM13A0A1B0GTR0 161 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 E5RJQ4 531 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 FBXO21O94952 628 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 PDGFRAP16234 1089 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 TACR2P21452 398 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 CD38P28907 300 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 EPHA8P29322 1005 aaPredicted RBP15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 ACADVLP49748 655 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 ECT2LQ008S8 904 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 CENPCQ03188 943 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 NNTQ13423 1086 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 EIF4EBP2Q13542 120 aaPredicted RBP15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 KANSL1Q7Z3B3 1105 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 EID2Q8N6I1 236 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 OR14C36Q8NHC7 312 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 CNDP2Q96KP4 475 aaKnown RBP15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 PRMT1Q99873 361 aaKnown RBP15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 OMDQ99983 421 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 IRX2Q9BZI1 471 aaPredicted RBP15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 ARHGAP20Q9P2F6 1191 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 FZD4Q9ULV1 537 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 SCML1Q9UN30 329 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 CA5BQ9Y2D0 317 aa15.98■□□□□ 0.15
CLSTN3-213ENST00000541953 HELZ2Q9BYK8 2649 aaKnown RBP15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 TARSL2A2RTX5 802 aaKnown RBP15.97■□□□□ 0.15
CLSTN3-213ENST00000541953 LRRC72A6NJI9 287 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms