RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 DSPP15924 2871 aaKnown RBP9.05□□□□□ -0.96
CLSTN3-212ENST00000541770 METTL12A8MUP2 240 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 PLK4O00444 970 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 GFRA2O00451 464 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 MDM4O15151 490 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 SART1O43290 800 aaKnown RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 TBX18O95935 607 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 ZNF883P0CG24 379 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 ITPKBP27987 946 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 OXTRP30559 389 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 HNRNPH3P31942 346 aaKnown RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 ATP5C1P36542 298 aaKnown RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 IL12RB1P42701 662 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 GABRB2P47870 512 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 PGFP49763 221 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 RGS7P49802 495 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 DAOAP59103 153 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 NOMO3P69849 1222 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 IL9RQ01113 521 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 BNC1Q01954 994 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 ARID5AQ03989 594 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 KLHL30Q0D2K2 578 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 ADIGQ0VDE8 80 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 TBX2Q13207 712 aaPredicted RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 E4F1Q66K89 784 aaPredicted RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 KLHDC10Q6PID8 442 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 LRRC69Q6ZNQ3 347 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 HTR3DQ70Z44 454 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 BHLHA9Q7RTU4 235 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 PASD1Q8IV76 773 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 DRC7Q8IY82 874 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 PDCD7Q8N8D1 485 aaKnown RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 C1orf131Q8NDD1 294 aaKnown RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 CADM4Q8NFZ8 388 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 BAHD1Q8TBE0 780 aaPredicted RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 SLC20A1Q8WUM9 679 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 UCMAQ8WVF2 138 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 CPLX3Q8WVH0 158 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 PPP1R13BQ96KQ4 1090 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 CPXM1Q96SM3 734 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 CDK5RAP1Q96SZ6 601 aaKnown RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 DNAJC7Q99615 494 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 AGPAT1Q99943 283 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 KLF16Q9BXK1 252 aaPredicted RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 MKRN2Q9H000 416 aaKnown RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 MIS12Q9H081 205 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 CLIC5Q9NZA1 410 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 USP36Q9P275 1121 aaKnown RBP9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 DKK4Q9UBT3 224 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 NUDT5Q9UKK9 219 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 SNX11Q9Y5W9 270 aa9.04□□□□□ -0.96
CLSTN3-212ENST00000541770 MYLKQ15746 1914 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 PLXNA2O75051 1894 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 A0A087WV48 116 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 A0A1W2PQH9 124 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 E5RJQ4 531 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 PAPSS1O43252 624 aaPredicted RBP9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 TNFSF14O43557 240 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 MFAP3LO75121 409 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 EPHX1P07099 455 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 HMBSP08397 361 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 CISD3P0C7P0 127 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 RALAP11233 206 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 UNGP13051 313 aaPredicted RBP9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 HLA-EP13747 358 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 LCP1P13796 627 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 CDC25BP30305 580 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 SCNN1AP37088 669 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 YWHAGP61981 247 aaKnown RBP eCLIP9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 SEMG2Q02383 582 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 CENPCQ03188 943 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 TEAD4Q15561 434 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 CLEC16AQ2KHT3 1053 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 KIF19Q2TAC6 998 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 PTPN20Q4JDL3 420 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 HGSNATQ68CP4 663 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 PPP1R2P3Q6NXS1 205 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 LAYNQ6UX15 382 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 BEND5Q7L4P6 421 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 TMC6Q7Z403 805 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 ADAT2Q7Z6V5 191 aaKnown RBP9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 SCD5Q86SK9 330 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 ZNF605Q86T29 641 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 TADA2BQ86TJ2 420 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 ERICH1Q86X53 443 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 ZDHHC17Q8IUH5 632 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 CNGA4Q8IV77 575 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 MSANTD4Q8NCY6 345 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 OR8K1Q8NGG5 319 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 PCDHB18PQ96TA0 734 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 TRIM62Q9BVG3 475 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 CIPCQ9C0C6 399 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 HAUS4Q9H6D7 363 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 NMUR1Q9HB89 426 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 ST7Q9NRC1 585 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 ASNSD1Q9NWL6 643 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 OSER1Q9NX31 292 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 MARK1Q9P0L2 795 aa9.03□□□□□ -0.96
CLSTN3-212ENST00000541770 PCDHGB2Q9Y5G2 931 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms