RNA–Protein interactions for RNA: ENST00000541578.5

SNHG1-217, Transcript of small nucleolar RNA host gene 1, human

TSL 3 BASIC

Gene SNHG1, Length 588 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-217	ENST00000541578	RPP40	O75818	363 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	ERBB2	P04626	1255 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	HSPA1A	P0DMV8	641 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	HSPA1B	P0DMV9	641 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	DRD1	P21728	446 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	UQCRC1	P31930	480 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	PSMC2	P35998	433 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	RPP30	P78346	268 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	CBFB	Q13951	182 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	SMAD1	Q15797	465 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D25	Q3MII6	688 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	TMEM119	Q4V9L6	283 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	SLC45A4	Q5BKX6	768 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	CFAP58	Q5T655	872 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	MFSD4B	Q5TF39	518 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	LRRC8D	Q7L1W4	858 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	ANKS1B	Q7Z6G8	1248 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	CHD1L	Q86WJ1	897 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	C11orf44	Q8N8P7	122 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	TDRD7	Q8NHU6	1098 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	RP9	Q8TA86	221 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D22A	Q8WUA7	517 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	XAGE5	Q8WWM1	108 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	R3HDM4	Q96D70	268 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	RNF125	Q96EQ8	232 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	VPS50	Q96JG6	964 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	REEP2	Q9BRK0	252 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	DPCD	Q9BVM2	203 aa	Predicted RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	TWSG1	Q9GZX9	223 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	VEZT	Q9HBM0	779 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	DUSP22	Q9NRW4	184 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	TMEM160	Q9NX00	188 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	NKX1-2	Q9UD57	310 aa	Predicted RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	STEAP1	Q9UHE8	339 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	CNOT7	Q9UIV1	285 aa	Known RBP	4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	SLC45A1	Q9Y2W3	748 aa		4.64	□□□□□ -1.67
SNHG1-217	ENST00000541578	MYO5C	Q9NQX4	1742 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	PLA2R1	Q13018	1463 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3D	A0A087WVF3	549 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3I	A0A087WXS9	549 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3E	A0A087X179	549 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3K	A0A087X1G2	549 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3B	A6NDS4	549 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3F	A6NER0	549 aa	Predicted RBP	4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	WIPF3	A6NGB9	483 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	LINC01548	A6NM66	108 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3L	B9A6J9	549 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	ZNF213	O14771	459 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	KLK10	O43240	276 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TAF5L	O75529	589 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	CER1	O95813	267 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	CSF1R	P07333	972 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	CNP	P09543	421 aa	Known RBP	4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3H	P0C7X1	549 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TMEM225B	P0DP42	221 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	ENG	P17813	658 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	RPS6KB1	P23443	525 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	ADORA2A	P29274	412 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	PCP4	P48539	62 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	CCR5	P51681	352 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	CCR9	P51686	369 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	DCAF7	P61962	342 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TFF2	Q03403	129 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	SLC10A2	Q12908	348 aa	Predicted RBP	4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	NFIL3	Q16649	462 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TRIM60	Q495X7	471 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	GALNTL6	Q49A17	601 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	ANKRD40	Q6AI12	368 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3G	Q6DHY5	549 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3C	Q6IPX1	549 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TMCO3	Q6UWJ1	677 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	CCDC129	Q6ZRS4	1044 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	BBS12	Q6ZW61	710 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	CPLX4	Q7Z7G2	160 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TRABD2A	Q86V40	505 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	TBC1D3	Q8IZP1	549 aa	Predicted RBP	4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	FAM9B	Q8IZU0	186 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	DDB2	Q92466	427 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	FAR2	Q96K12	515 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	ABHD16B	Q9H3Z7	469 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	NSMCE4A	Q9NXX6	385 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	SERGEF	Q9UGK8	458 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	ADAMTS5	Q9UNA0	930 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	DNAJC16	Q9Y2G8	782 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	SLC27A6	Q9Y2P4	619 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	MROH2A	A6NES4	1674 aa		4.63	□□□□□ -1.67
SNHG1-217	ENST00000541578	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	RERE	Q9P2R6	1566 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	FAM90A18P	A6NE21	464 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	FAM90A16P	A6NEW6	464 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	PGPEP1L	A6NFU8	196 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	SAC3D1	A6NKF1	404 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	CGB1	A6NKQ9	187 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	FAM90A9P	A6NNJ1	464 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	FAM90A5P	A8MXJ8	464 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578		B4DLN1	442 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	EXOC5	O00471	708 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	PEX12	O00623	359 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	WDR47	O94967	919 aa		4.62	□□□□□ -1.67
SNHG1-217	ENST00000541578	SLC3A2	P08195	630 aa	Known RBP	4.62	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms