RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 MDM4O15151 490 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 PTPN1P18031 435 aaKnown RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 SERPINB9P50453 376 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 CDK18Q07002 472 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 CRHR2Q13324 411 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 TUBB3Q13509 450 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 TBCCQ15814 346 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 SYPL2Q5VXT5 272 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 MBLAC2Q68D91 279 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 GDF6Q6KF10 455 aaPredicted RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 DENND5BQ6ZUT9 1274 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 ARCQ7LC44 396 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 CDKL3Q8IVW4 592 aaPredicted RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 WDR75Q8IWA0 830 aaKnown RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 PIWIL2Q8TC59 973 aaKnown RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 HASPINQ8TF76 798 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 LGMNQ99538 433 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 APBA2Q99767 749 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 ECSITQ9BQ95 431 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 ZNF670Q9BS34 389 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 KATNAL1Q9BW62 490 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 RHOBTB2Q9BYZ6 727 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 C1orf21Q9H246 121 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 LRRC4Q9HBW1 653 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 MIOSQ9NXC5 875 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 DDX43Q9NXZ2 648 aaKnown RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 MOCS1Q9NZB8 636 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 EMCNQ9ULC0 261 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 SOX13Q9UN79 622 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 GCATO75600 419 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 ALDOAP04075 364 aaKnown RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 AOC1P19801 751 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 YY1P25490 414 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 CALRP27797 417 aaKnown RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 PTPN9P43378 593 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 PDE1BQ01064 536 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 TRIM32Q13049 653 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 PCBP1Q15365 356 aaKnown RBP eCLIP12.84□□□□□ -0.35
RNF4-222ENST00000541204 RALGPS1Q5JS13 557 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 N4BP2L1Q5TBK1 243 aaPredicted RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 IFNL1Q8IU54 200 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 ZDHHC17Q8IUH5 632 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 USP6NLQ92738 828 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 SHCBP1LQ9BZQ2 653 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 TSPYL2Q9H2G4 693 aaPredicted RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 FAM124BQ9H5Z6 455 aaPredicted RBP12.84□□□□□ -0.35
RNF4-222ENST00000541204 SEPT10Q9P0V9 454 aa12.84□□□□□ -0.35
RNF4-222ENST00000541204 M0QYT0 321 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 TPP1O14773 563 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 SORBS2O94875 1100 aaKnown RBP12.83□□□□□ -0.36
RNF4-222ENST00000541204 LYNP07948 512 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 FGF3P11487 239 aaPredicted RBP12.83□□□□□ -0.36
RNF4-222ENST00000541204 AKR1A1P14550 325 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 TPSB2P20231 275 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 SLC1A6P48664 564 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 SCNN1GP51170 649 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 TPSAB1Q15661 275 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 DPYSL2Q16555 572 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 C11orf91Q3C1V1 193 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 TEDDM1Q5T9Z0 273 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 KYAT3Q6YP21 454 aaKnown RBP12.83□□□□□ -0.36
RNF4-222ENST00000541204 ATG14Q6ZNE5 492 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 PAQR9Q6ZVX9 377 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 RAPH1Q70E73 1250 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 SIX6OS1Q8N1H7 587 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 C3orf58Q8NDZ4 430 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 PYDC1Q8WXC3 89 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 SENP8Q96LD8 212 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 ZIC5Q96T25 663 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 NPR3P17342 541 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 MATKP42679 507 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 TKTL1P51854 596 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 POLE2P56282 527 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 MRPS6P82932 125 aaKnown RBP12.83□□□□□ -0.36
RNF4-222ENST00000541204 CDC16Q13042 620 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 PDE1CQ14123 709 aaPredicted RBP12.83□□□□□ -0.36
RNF4-222ENST00000541204 GSTA3Q16772 222 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 LRRC36Q1X8D7 754 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 XKR4Q5GH76 650 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 BSPRYQ5W0U4 402 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 SMYD5Q6GMV2 418 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 TIFABQ6ZNK6 161 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 CLEC20AQ6ZU45 233 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 RSPH3Q86UC2 560 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 TP53INP2Q8IXH6 220 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 C11orf84Q9BUA3 381 aaPredicted RBP12.83□□□□□ -0.36
RNF4-222ENST00000541204 DUSP16Q9BY84 665 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 FAM105AQ9NUU6 356 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 IL1RAPL1Q9NZN1 696 aa12.83□□□□□ -0.36
RNF4-222ENST00000541204 MYBPHLA2RUH7 354 aa12.82□□□□□ -0.36
RNF4-222ENST00000541204 MANSC4A6NHS7 340 aaPredicted RBP12.82□□□□□ -0.36
RNF4-222ENST00000541204 CRABP2P29373 138 aa12.82□□□□□ -0.36
RNF4-222ENST00000541204 GMPRP36959 345 aa12.82□□□□□ -0.36
RNF4-222ENST00000541204 RABGAP1LQ5R372 815 aa12.82□□□□□ -0.36
RNF4-222ENST00000541204 HEATR6Q6AI08 1181 aaKnown RBP12.82□□□□□ -0.36
RNF4-222ENST00000541204 MAVSQ7Z434 540 aa12.82□□□□□ -0.36
RNF4-222ENST00000541204 GALNT15Q8N3T1 639 aa12.82□□□□□ -0.36
RNF4-222ENST00000541204 NME8Q8N427 588 aa12.82□□□□□ -0.36
RNF4-222ENST00000541204 CENPIQ92674 756 aaPredicted RBP12.82□□□□□ -0.36
RNF4-222ENST00000541204 PPP1R10Q96QC0 940 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms