RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 HTR3DQ70Z44 454 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 ACOT1Q86TX2 421 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 SPACA3Q8IXA5 215 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 UBR7Q8N806 425 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 FAM181AQ8N9Y4 354 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 FGF11Q92914 225 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 IGSF8Q969P0 613 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 CCDC42Q96M95 316 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 SLITRK1Q96PX8 696 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 BAG1Q99933 345 aaPredicted RBP13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 MED10Q9BTT4 135 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 ELOVL4Q9GZR5 314 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 CCSER2Q9H7U1 834 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 OSGEPQ9NPF4 335 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 MARK1Q9P0L2 795 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 CHORDC1Q9UHD1 332 aaPredicted RBP13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 FBXO10Q9UK96 956 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 SH3BP1Q9Y3L3 701 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 CEP83Q9Y592 693 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 AK5Q9Y6K8 562 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 ATP8B3O60423 1300 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 AKR1B10O60218 316 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 WISP1O95388 367 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 ZDHHC11BP0C7U3 371 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 C7P10643 843 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 VDRP11473 427 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 CYP11B1P15538 503 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 CLCN1P35523 988 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 CYLC1P35663 651 aaPredicted RBP13□□□□□ -0.33
CLSTN3-208ENST00000538933 COPAP53621 1224 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 RAD23BP54727 409 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 CXADRP78310 365 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 ARID5BQ14865 1188 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 STILQ15468 1287 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 HECTD3Q5T447 861 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 FBXL19Q6PCT2 694 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 SLC47A2Q86VL8 602 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 ERICH1Q86X53 443 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 TMPRSS6Q8IU80 811 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 TMTC1Q8IUR5 882 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 LRRC8AQ8IWT6 810 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 OVCA2Q8WZ82 227 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 PCED1AQ9H1Q7 454 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 HAUS4Q9H6D7 363 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 TM9SF3Q9HD45 589 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 IL37Q9NZH6 218 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 HMGXB4Q9UGU5 601 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 KIAA1257Q9ULG3 409 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 CNTN6Q9UQ52 1028 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 DOPEY2Q9Y3R5 2298 aa13□□□□□ -0.33
CLSTN3-208ENST00000538933 PLXNA2O75051 1894 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 NEDD8-MDP1E9PL57 170 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 CBX4O00257 560 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 C1SP09871 688 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 PTPN1P18031 435 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 BRD2P25440 801 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 YWHAQP27348 245 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 HNRNPH3P31942 346 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 IL12RB1P42701 662 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 CTSKP43235 329 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 GRIA4P48058 902 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 PGFP49763 221 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 ZNF132P52740 706 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 PKDCCQ504Y2 493 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 MDH1BQ5I0G3 518 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 ZNF677Q86XU0 584 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 NUP93Q8N1F7 819 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 SLC4A11Q8NBS3 891 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 B3GALNT2Q8NCR0 500 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 EPS8L1Q8TE68 723 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 SIPA1Q96FS4 1042 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 XPO6Q96QU8 1125 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 TWNKQ96RR1 684 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 ORAI3Q9BRQ5 295 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 BBS2Q9BXC9 721 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 DPEP3Q9H4B8 488 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 C6orf106Q9H6K1 298 aaPredicted RBP12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 FAM49BQ9NUQ9 324 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 WDR35Q9P2L0 1181 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 THAP10Q9P2Z0 257 aaPredicted RBP12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 HESX1Q9UBX0 185 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 FTSJ1Q9UET6 329 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 LRRK2Q5S007 2527 aa12.99□□□□□ -0.33
CLSTN3-208ENST00000538933 BSNQ9UPA5 3926 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 FAM92AA1XBS5 289 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 M0QYV0 167 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 BRINP1O60477 761 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 CDK4P11802 303 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 C6P13671 934 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 ADORA2BP29275 332 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 HNF1BP35680 557 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 EIF4A3P38919 411 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 PRKCIP41743 596 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 DGKGP49619 791 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 TUBP50607 506 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 CCT8P50990 548 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 SLC8A3P57103 927 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 CDK17Q00537 523 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 DNAJC3Q13217 504 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms