RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 ZNF304Q9HCX3 659 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 GOLGA8IPA6NC78 632 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 HAT1O14929 419 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 TP73O15350 636 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 DYNC1LI2O43237 492 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 FAM189A1O60320 539 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 DAB1O75553 588 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 GCNT3O95395 438 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 INHBBP09529 407 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 OAZ1P54368 228 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 SOX10P56693 466 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 NFE2Q16621 373 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 NRF1Q16656 503 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 HIF1AQ16665 826 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 C12orf65Q9H3J6 166 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 RAD21L1Q9H4I0 556 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 PRR12Q9ULL5 1215 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 KIAA1024Q9UPX6 916 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 PCDHB13Q9Y5F0 798 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ARFGEF2Q9Y6D5 1785 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 PRKAR2AP13861 404 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 IL32P24001 234 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 IL4RP24394 825 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 DCKP27707 260 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ADORA2AP29274 412 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 CDH15P55291 814 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 EIF3EP60228 445 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 COPZ1P61923 177 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ODR4Q5SWX8 454 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ZNF598Q86UK7 904 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ASCC1Q8N9N2 400 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 FNIP1Q8TF40 1166 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 PGBD4Q96DM1 585 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ZNF512Q96ME7 567 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 TCF12Q99081 682 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ZNF577Q9BSK1 485 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 MCOLN1Q9GZU1 580 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 NEK6Q9HC98 313 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 SIX2Q9NPC8 291 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 FBXO28Q9NVF7 368 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 TMEM260Q9NX78 707 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ADAMTS7Q9UKP4 1686 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 H7C0C1 242 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 MYL4P12829 197 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ITIH1P19827 911 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ITGAXP20702 1163 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 NAMPTP43490 491 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 SELENBP1Q13228 472 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 FGD3Q5JSP0 725 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 BNC2Q6ZN30 1099 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 GPR142Q7Z601 462 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 OR6J1Q8NGC5 347 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 SLC5A5Q92911 643 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 KATNAL1Q9BW62 490 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 POLR1BQ9H9Y6 1135 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 ATPIF1Q9UII2 106 aa11.12□□□□□ -0.63
CLSTN3-207ENST00000537408 A8MU76 341 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 MTA2O94776 668 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 DHRS4L1P0CG22 281 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 FXR2P51116 673 aaKnown RBP eCLIP11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 PPP2R2BQ00005 443 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 GPS1Q13098 491 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 KNOP1Q1ED39 458 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 PGS1Q32NB8 556 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 CEP78Q5JTW2 689 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 TMEM26Q6ZUK4 368 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 PCGF5Q86SE9 256 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 SLC51BQ86UW2 128 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 NATD1Q8N6N6 113 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 STARD7Q9NQZ5 370 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 DDX28Q9NUL7 540 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 LOC100653049A0A140TA62 436 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 KRT34O76011 436 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 ECT2LQ008S8 904 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 TNFAIP2Q03169 654 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 NME3Q13232 169 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 BAATQ14032 418 aaPredicted RBP11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 SHROOM1Q2M3G4 852 aaPredicted RBP11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 TEDDM1Q5T9Z0 273 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 NEK5Q6P3R8 708 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 SLC38A6Q8IZM9 456 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 DCLK2Q8N568 766 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 CPSF7Q8N684 471 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 EFCAB3Q8N7B9 438 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 GRPEL2Q8TAA5 225 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 VPS35Q96QK1 796 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 KCTD10Q9H3F6 313 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 RIMS3Q9UJD0 308 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 KIAA1257Q9ULG3 409 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 SDR42E2A6NKP2 422 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 A6NL46 340 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 B8ZZF3 427 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 PDXKO00764 312 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 SLC22A1O15245 554 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 MTSS1O43312 755 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 MSI1O43347 362 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 NR3C1P04150 777 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 FOSL1P15407 271 aa11.11□□□□□ -0.63
CLSTN3-207ENST00000537408 GNL1P36915 607 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms