RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ACTN2P35609 894 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 PEX19P40855 299 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 PNPLA4P41247 253 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 GPD2P43304 727 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 SSR1P43307 286 aaKnown RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 FAM3BP58499 235 aaPredicted RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 RPL15P61313 204 aaKnown RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 TDGQ13569 410 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 CBFBQ13951 182 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 KCNJ12Q14500 433 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 TBCEQ15813 527 aaPredicted RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 ST3GAL2Q16842 350 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 ALDH1L2Q3SY69 923 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 SPDYE7PQ495Y7 208 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 FAM90A2PQ658T7 463 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 SP5Q6BEB4 398 aaPredicted RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 LAIR1Q6GTX8 287 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 INO80CQ6PI98 192 aaPredicted RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 SLC22A25Q6T423 547 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 RPAINQ86UA6 219 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 CAND1Q86VP6 1230 aaKnown RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 P3H2Q8IVL5 708 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 B3GALNT2Q8NCR0 500 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 SUPT20HQ8NEM7 779 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 CREB3L4Q8TEY5 395 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 RSPH1Q8WYR4 309 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 FKBP10Q96AY3 582 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 ARRDC3Q96B67 414 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 CHFRQ96EP1 664 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 FBXL20Q96IG2 436 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 LENG8Q96PV6 779 aaPredicted RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 HERC2P3Q9BVR0 1158 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 PHF7Q9BWX1 381 aaPredicted RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 AP1M1Q9BXS5 423 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 USP44Q9H0E7 712 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 INTS2Q9H0H0 1204 aaKnown RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 SYNCQ9H7C4 482 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 TRIM36Q9NQ86 728 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 RXFP3Q9NSD7 469 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 SYBUQ9NX95 663 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 CWC25Q9NXE8 425 aaPredicted RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 PPP1R14DQ9NXH3 145 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 KCTD5Q9NXV2 234 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 ADD3Q9UEY8 706 aaKnown RBP3.58□□□□□ -1.84
CD44-229ENST00000528672 PACSIN3Q9UKS6 424 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 SLC12A4Q9UP95 1085 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 RCE1Q9Y256 329 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 ENTPD2Q9Y5L3 495 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 PSAT1Q9Y617 370 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 PIAS3Q9Y6X2 628 aa3.58□□□□□ -1.84
CD44-229ENST00000528672 PIPSLA2A3N6 862 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 SH2D7A6NKC9 451 aaPredicted RBP3.57□□□□□ -1.84
CD44-229ENST00000528672 A8MVJ9 347 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 P4HA2O15460 535 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 NKX2-8O15522 239 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 SPRY2O43597 315 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 SGPL1O95470 568 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 CLEC3BP05452 202 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 NHLRC4P0CG21 123 aaPredicted RBP3.57□□□□□ -1.84
CD44-229ENST00000528672 HKR1P10072 659 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 EPHA8P29322 1005 aaPredicted RBP3.57□□□□□ -1.84
CD44-229ENST00000528672 GALNSP34059 522 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 MLH1P40692 756 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 HARS2P49590 506 aaKnown RBP3.57□□□□□ -1.84
CD44-229ENST00000528672 RCAN1P53805 252 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 TERF1P54274 439 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 CDH15P55291 814 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 INHBEP58166 350 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 RPS3AP61247 264 aaKnown RBP3.57□□□□□ -1.84
CD44-229ENST00000528672 GOLGA8FQ08AF8 430 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 DCTN2Q13561 401 aaKnown RBP3.57□□□□□ -1.84
CD44-229ENST00000528672 WTAPQ15007 396 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 PRICKLE4Q2TBC4 344 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 AASDHQ4L235 1098 aaPredicted RBP3.57□□□□□ -1.84
CD44-229ENST00000528672 C1QTNF12Q5T7M4 302 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 PXKQ7Z7A4 578 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 ADGRG6Q86SQ4 1221 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 ADSSL1Q8N142 457 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 ETNPPLQ8TBG4 499 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 METTL6Q8TCB7 284 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 NOC3LQ8WTT2 800 aaKnown RBP3.57□□□□□ -1.84
CD44-229ENST00000528672 LINC00476Q8WZB0 136 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 NPIPB3Q92617 1050 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 USP6NLQ92738 828 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 NSUN4Q96CB9 384 aaKnown RBP3.57□□□□□ -1.84
CD44-229ENST00000528672 CTHRC1Q96CG8 243 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 KIF1BPQ96EK5 621 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 MASTLQ96GX5 879 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 CD180Q99467 661 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 ARHGAP39Q9C0H5 1083 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 SLC25A18Q9H1K4 315 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 SYNPO2LQ9H987 977 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 SAP30LQ9HAJ7 183 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 GLOD4Q9HC38 313 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 PDE11AQ9HCR9 933 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 KCNK9Q9NPC2 374 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 PLSCR4Q9NRQ2 329 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 SEPT11Q9NVA2 429 aaKnown RBP3.57□□□□□ -1.84
CD44-229ENST00000528672 ALKBH4Q9NXW9 302 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 ADAM21Q9UKJ8 722 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms