RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CCR1P32246 355 aa11□□□□□ -0.65
CD44-227ENST00000528086 PBX1P40424 430 aa11□□□□□ -0.65
CD44-227ENST00000528086 STAT1P42224 750 aa11□□□□□ -0.65
CD44-227ENST00000528086 SULT1E1P49888 294 aa11□□□□□ -0.65
CD44-227ENST00000528086 ZNF165P49910 485 aa11□□□□□ -0.65
CD44-227ENST00000528086 METAP1P53582 386 aa11□□□□□ -0.65
CD44-227ENST00000528086 GSCP56915 257 aaPredicted RBP11□□□□□ -0.65
CD44-227ENST00000528086 ARHGAP8P85298 464 aa11□□□□□ -0.65
CD44-227ENST00000528086 ARID5AQ03989 594 aa11□□□□□ -0.65
CD44-227ENST00000528086 NR1I3Q14994 352 aa11□□□□□ -0.65
CD44-227ENST00000528086 CLEC16AQ2KHT3 1053 aa11□□□□□ -0.65
CD44-227ENST00000528086 C15orf59Q2T9L4 293 aaPredicted RBP11□□□□□ -0.65
CD44-227ENST00000528086 SLC25A52Q3SY17 297 aa11□□□□□ -0.65
CD44-227ENST00000528086 CCDC14Q49A88 953 aa11□□□□□ -0.65
CD44-227ENST00000528086 FKBP15Q5T1M5 1219 aa11□□□□□ -0.65
CD44-227ENST00000528086 C9orf64Q5T6V5 341 aa11□□□□□ -0.65
CD44-227ENST00000528086 STPG1Q5TH74 334 aa11□□□□□ -0.65
CD44-227ENST00000528086 SDE2Q6IQ49 451 aa11□□□□□ -0.65
CD44-227ENST00000528086 KIAA1324Q6UXG2 1013 aaKnown RBP11□□□□□ -0.65
CD44-227ENST00000528086 SERPINA13PQ6UXR4 307 aa11□□□□□ -0.65
CD44-227ENST00000528086 MON1BQ7L1V2 547 aa11□□□□□ -0.65
CD44-227ENST00000528086 ARCQ7LC44 396 aa11□□□□□ -0.65
CD44-227ENST00000528086 ZNF677Q86XU0 584 aa11□□□□□ -0.65
CD44-227ENST00000528086 ATP6V0D2Q8N8Y2 350 aa11□□□□□ -0.65
CD44-227ENST00000528086 OR2T3Q8NH03 318 aa11□□□□□ -0.65
CD44-227ENST00000528086 FRS2Q8WU20 508 aa11□□□□□ -0.65
CD44-227ENST00000528086 PIGKQ92643 395 aa11□□□□□ -0.65
CD44-227ENST00000528086 CENPIQ92674 756 aaPredicted RBP11□□□□□ -0.65
CD44-227ENST00000528086 VOPP1Q96AW1 172 aa11□□□□□ -0.65
CD44-227ENST00000528086 FAM129BQ96TA1 746 aa11□□□□□ -0.65
CD44-227ENST00000528086 PSMB7Q99436 277 aa11□□□□□ -0.65
CD44-227ENST00000528086 C11orf70Q9BRQ4 267 aa11□□□□□ -0.65
CD44-227ENST00000528086 ORAI3Q9BRQ5 295 aa11□□□□□ -0.65
CD44-227ENST00000528086 TRIM62Q9BVG3 475 aa11□□□□□ -0.65
CD44-227ENST00000528086 TKTL2Q9H0I9 626 aa11□□□□□ -0.65
CD44-227ENST00000528086 METTL5Q9NRN9 209 aaKnown RBP11□□□□□ -0.65
CD44-227ENST00000528086 SERGEFQ9UGK8 458 aa11□□□□□ -0.65
CD44-227ENST00000528086 ERVW-1Q9UQF0 538 aa11□□□□□ -0.65
CD44-227ENST00000528086 ITIH6Q6UXX5 1313 aa11□□□□□ -0.65
CD44-227ENST00000528086 TMEM131Q92545 1883 aa11□□□□□ -0.65
CD44-227ENST00000528086 CABIN1Q9Y6J0 2220 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 IGLV3-10A0A075B6K4 115 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 DRGXA6NNA5 263 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 F5H5T6 163 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 FAM72CH0Y354 149 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 SIN3BO75182 1162 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 PDGFRAP16234 1089 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 POLR2EP19388 210 aaKnown RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 CDK11BP21127 795 aaKnown RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 MAOBP27338 520 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 ACSL1P33121 698 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 RFC1P35251 1148 aaPredicted RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 PLK1P53350 603 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 LIMK1P53667 647 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 BNC1Q01954 994 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 OGDHQ02218 1023 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 RPL6Q02878 288 aaKnown RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 ZNF33AQ06730 810 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 ARID5BQ14865 1188 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 HNRNPA1L2Q32P51 320 aaKnown RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 FNDC3BQ53EP0 1204 aaKnown RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 SPDYCQ5MJ68 293 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 PPP1R15BQ5SWA1 713 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 FAM72AQ5TYM5 149 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 MANEALQ5VSG8 457 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 FAM72DQ6L9T8 149 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 LPCAT2Q7L5N7 544 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 CYP2U1Q7Z449 544 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 LUZP1Q86V48 1076 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 FAM72BQ86X60 149 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 FAM131BQ86XD5 332 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 PHF13Q86YI8 300 aaPredicted RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 NEK11Q8NG66 645 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 NETO1Q8TDF5 533 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 UCMAQ8WVF2 138 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 RXFP2Q8WXD0 754 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 PTPRN2Q92932 1015 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 SIPA1Q96FS4 1042 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 TOE1Q96GM8 510 aaKnown RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 RPL10LQ96L21 214 aaKnown RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 DDX50Q9BQ39 737 aaKnown RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 FEM1AQ9BSK4 669 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 SIK2Q9H0K1 926 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 CAPN10Q9HC96 672 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 MPP6Q9NZW5 540 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 KIAA1522Q9P206 1035 aaPredicted RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 TBC1D30Q9Y2I9 924 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 DAAM1Q9Y4D1 1078 aa10.99□□□□□ -0.65
CD44-227ENST00000528086 TP53BP1Q12888 1972 aaPredicted RBP10.99□□□□□ -0.65
CD44-227ENST00000528086 A0A0D9SEW6 157 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 A0A1B0GVM2 712 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 TCAF2A6NFQ2 919 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 SNAP91O60641 907 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 ZNF217O75362 1048 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 MT-CO1P00395 513 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 SLC2A3P11169 496 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 CD6P30203 668 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 HDAC4P56524 1084 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 RPL7AP62424 266 aaKnown RBP10.98□□□□□ -0.65
CD44-227ENST00000528086 ATP11AP98196 1134 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms