RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 UBA3Q8TBC4 463 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 TMEM176AQ96HP8 235 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 LENG8Q96PV6 779 aaPredicted RBP9.88□□□□□ -0.83
VCAN-210ENST00000513960 PTPRHQ9HD43 1115 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 HSFX1Q9UBD0 423 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 DNAJB4Q9UDY4 337 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 SSC5DA1L4H1 1573 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 SDR42E2A6NKP2 422 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 ADM5C9JUS6 153 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 ATP9BO43861 1147 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 DNAJA2O60884 412 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 DHRS4L1P0CG22 281 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 RGS7P49802 495 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 PLOD1Q02809 727 aaPredicted RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 CCDC92Q53HC0 331 aaPredicted RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 IL31Q6EBC2 164 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 UNC5AQ6ZN44 842 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 MPP5Q8N3R9 675 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 PCDH20Q8N6Y1 951 aaKnown RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 MZB1Q8WU39 189 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 NCSTNQ92542 709 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 RCN3Q96D15 328 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 MINDY3Q9H8M7 445 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 PAK5Q9P286 719 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 USP18Q9UMW8 372 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 SF3B1O75533 1304 aaKnown RBP eCLIP9.87□□□□□ -0.83
VCAN-210ENST00000513960 WDR27A2RRH5 827 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 SERPINE1P05121 402 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 XRCC1P18887 633 aaPredicted RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 EPHA3P29320 983 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 IDH3AP50213 366 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 SLC25A11Q02978 314 aaKnown RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 MBTD1Q05BQ5 628 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 TFDP2Q14188 446 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 JADE1Q6IE81 842 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 CMC1Q7Z7K0 106 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 XYLT1Q86Y38 959 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 AURKCQ9UQB9 309 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 A0A0G2JLL6 359 aaPredicted RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 TRIM43BA6NCK2 446 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 APOC4-APOC2K7ER74 178 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 GPR25O00155 361 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 CXCL11O14625 94 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 MICAL2O94851 1124 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 APOC2P02655 101 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 ERBB2P04626 1255 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 EEF1B2P24534 225 aaKnown RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 GRIA1P42261 906 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 C15orf59Q2T9L4 293 aaPredicted RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 HSF5Q4G112 596 aaPredicted RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 DUS1LQ6P1R4 473 aaKnown RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 GPR141Q7Z602 305 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 PRRT2Q7Z6L0 340 aaPredicted RBP9.87□□□□□ -0.83
VCAN-210ENST00000513960 KYQ8NBH2 561 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 CCNYQ8ND76 341 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 CATSPER1Q8NEC5 780 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 HPDLQ96IR7 371 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 BTBD9Q96Q07 612 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 BCO2Q9BYV7 579 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 R3HDMLQ9H3Y0 253 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 ARMC7Q9H6L4 198 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 CYTH4Q9UIA0 394 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 SIX4Q9UIU6 781 aa9.87□□□□□ -0.83
VCAN-210ENST00000513960 A0A087WZ62 844 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 SAC3D1A6NKF1 404 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 SMIM18P0DKX4 95 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 VDRP11473 427 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 PDGFRAP16234 1089 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 TFE3P19532 575 aaPredicted RBP9.86□□□□□ -0.83
VCAN-210ENST00000513960 SLC5A2P31639 672 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 GLRBP48167 497 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 THOP1P52888 689 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 SLC5A3P53794 718 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 KLF10Q13118 480 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 CES4AQ5XG92 561 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 FASTKD5Q7L8L6 764 aaKnown RBP9.86□□□□□ -0.83
VCAN-210ENST00000513960 DCLK2Q8N568 766 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 SLC4A11Q8NBS3 891 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 TFB1MQ8WVM0 346 aaKnown RBP9.86□□□□□ -0.83
VCAN-210ENST00000513960 GAB3Q8WWW8 586 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 AGAP3Q96P47 875 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 FDXACB1Q9BRP7 624 aaPredicted RBP9.86□□□□□ -0.83
VCAN-210ENST00000513960 RSAD1Q9HA92 442 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 CYP3A43Q9HB55 503 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 TIMMDC1Q9NPL8 285 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 TCF7L2Q9NQB0 619 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 RBMX2Q9Y388 322 aaKnown RBP9.86□□□□□ -0.83
VCAN-210ENST00000513960 TTLL3Q9Y4R7 772 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 AKAP10O43572 662 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 GLRA3O75311 464 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 RFPL1O75677 317 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 DDNO94850 711 aaPredicted RBP9.86□□□□□ -0.83
VCAN-210ENST00000513960 HMGCRP04035 888 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 OCM2P0CE71 109 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 OCMP0CE72 109 aaPredicted RBP9.86□□□□□ -0.83
VCAN-210ENST00000513960 INSRRP14616 1297 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 ATICP31939 592 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 GTF2A2P52657 109 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 MTTPP55157 894 aa9.86□□□□□ -0.83
VCAN-210ENST00000513960 SH3PXD2AQ5TCZ1 1133 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms