RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 SIGLEC10Q96LC7 697 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 PGLYRP2Q96PD5 576 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 PPP1R2P1Q96PQ5 205 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 CYTH2Q99418 400 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 CLSTN3Q9BQT9 956 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 NAT9Q9BTE0 207 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 CCDC134Q9H6E4 229 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 VPS37BQ9H9H4 285 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 SSU72Q9NP77 194 aaKnown RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 PRDM5Q9NQX1 630 aaPredicted RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.6□□□□□ -1.03
RNF4-220ENST00000513578 SPG21Q9NZD8 308 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 SFMBT1Q9UHJ3 866 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 SSUH2Q9Y2M2 353 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 CDY1Q9Y6F8 540 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 TRIM43BA6NCK2 446 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 E9PAM4 449 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 GOLGA8MH3BSY2 632 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 UPP2O95045 317 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 MAP3K6O95382 1288 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 APOEP02649 317 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 C1QAP02745 245 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 APRTP07741 180 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 CSH1P0DML2 217 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 CSH2P0DML3 217 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 PRKCHP24723 683 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 STX2P32856 288 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 LSP1P33241 339 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 OR1D2P34982 312 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 PPM1AP35813 382 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 ELK3P41970 407 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 TUBP50607 506 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 NDST2P52849 883 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 ARPP19P56211 112 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 HTRA4P83105 476 aaPredicted RBP8.59□□□□□ -1.03
RNF4-220ENST00000513578 TNK2Q07912 1038 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 FRG1Q14331 258 aaKnown RBP8.59□□□□□ -1.03
RNF4-220ENST00000513578 TEX44Q53QW1 395 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 RASIP1Q5U651 963 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 SDHAF4Q5VUM1 108 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 STEAP4Q687X5 459 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 NUGGCQ68CJ6 796 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 TIGD7Q6NT04 549 aaPredicted RBP8.59□□□□□ -1.03
RNF4-220ENST00000513578 PRSS55Q6UWB4 352 aaPredicted RBP8.59□□□□□ -1.03
RNF4-220ENST00000513578 LEKR1Q6ZMV7 388 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 B4GALNT4Q76KP1 1039 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 NLRP14Q86W24 1093 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 ARHGAP12Q8IWW6 846 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 UMODL1-AS1Q8N2C9 162 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 TTC9BQ8N6N2 239 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 CCNYQ8ND76 341 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 TRIM43Q96BQ3 446 aaPredicted RBP8.59□□□□□ -1.03
RNF4-220ENST00000513578 TMEM169Q96HH4 297 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 TEKT5Q96M29 485 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 IL12RB2Q99665 862 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 SEPT5Q99719 369 aaPredicted RBP8.59□□□□□ -1.03
RNF4-220ENST00000513578 EBNA1BP2Q99848 306 aaKnown RBP8.59□□□□□ -1.03
RNF4-220ENST00000513578 EPN3Q9H201 632 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 RXFP1Q9HBX9 757 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 IL23AQ9NPF7 189 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 TMEM248Q9NWD8 314 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 MARCH2Q9P0N8 246 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 PSMC3IPQ9P2W1 217 aaPredicted RBP8.59□□□□□ -1.03
RNF4-220ENST00000513578 SSX2IPQ9Y2D8 614 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 SLC27A5Q9Y2P5 690 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 HS3ST4Q9Y661 456 aa8.59□□□□□ -1.03
RNF4-220ENST00000513578 MIA3Q5JRA6 1907 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 MATN3O15232 486 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 ADAM12O43184 909 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 MSI1O43347 362 aaKnown RBP8.58□□□□□ -1.04
RNF4-220ENST00000513578 MAFKO60675 156 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 LILRB3O75022 631 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 ALDH1A2O94788 518 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 AP2A1O95782 977 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 CSF2RAP15509 400 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 RAG1P15918 1043 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 HMGA1P17096 107 aaKnown RBP8.58□□□□□ -1.04
RNF4-220ENST00000513578 ITGB8P26012 769 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 SSTR1P30872 391 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 HPDP32754 393 aaPredicted RBP8.58□□□□□ -1.04
RNF4-220ENST00000513578 PBX3P40426 434 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 SLCO1A2P46721 670 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 ATP1A2P50993 1020 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 DEFB103AP81534 67 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 IFRD2Q12894 506 aaPredicted RBP8.58□□□□□ -1.04
RNF4-220ENST00000513578 BTG3Q14201 252 aaPredicted RBP8.58□□□□□ -1.04
RNF4-220ENST00000513578 MS4A13Q5J8X5 152 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 PIK3R6Q5UE93 754 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 KCTD11Q693B1 232 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 KIAA1841Q6NSI8 718 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 LRRC31Q6UY01 552 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 ZNF771Q7L3S4 317 aaPredicted RBP8.58□□□□□ -1.04
RNF4-220ENST00000513578 PID1Q7Z2X4 250 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 UBE2Q1Q7Z7E8 422 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 TRABD2AQ86V40 505 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 ANKMY2Q8IV38 441 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 IGDCC3Q8IVU1 814 aa8.58□□□□□ -1.04
RNF4-220ENST00000513578 CCDC117Q8IWD4 279 aaPredicted RBP8.58□□□□□ -1.04
RNF4-220ENST00000513578 TCEAL8Q8IYN2 117 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms