RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 FAM189BP81408 668 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 GUCY1B3Q02153 619 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 ZNF543Q08ER8 600 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 SP140Q13342 867 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 NEDD9Q14511 834 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 SMC1AQ14683 1233 aaKnown RBP4.41□□□□□ -1.7
USP54-217ENST00000498213 LPIN1Q14693 890 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 SPDYE7PQ495Y7 208 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 MCMDC2Q4G0Z9 681 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 PDCD4Q53EL6 469 aaKnown RBP4.41□□□□□ -1.7
USP54-217ENST00000498213 FAM102BQ5T8I3 360 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 MFSD6Q6ZSS7 791 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 SEPT14Q6ZU15 432 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 TPRG1Q6ZUI0 275 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 LHFPL2Q6ZUX7 228 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 RSPH3Q86UC2 560 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 SYT12Q8IV01 421 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 SLC35B2Q8TB61 432 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 CLDN23Q96B33 292 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 FTHL17Q9BXU8 183 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 TRIM4Q9C037 500 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 ZNF215Q9UL58 517 aaPredicted RBP4.41□□□□□ -1.7
USP54-217ENST00000498213 CHST2Q9Y4C5 530 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 NRCAMQ92823 1304 aa4.41□□□□□ -1.7
USP54-217ENST00000498213 SETD2Q9BYW2 2564 aaPredicted RBP4.4□□□□□ -1.7
USP54-217ENST00000498213 CYP2D7A0A087X1C5 515 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 UNC119BA6NIH7 251 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 FAM171A2A8MVW0 826 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 RANBP6O60518 1105 aaKnown RBP4.4□□□□□ -1.71
USP54-217ENST00000498213 EPN2O95208 641 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 STAG3L1P0CL83 205 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 GP1BBP13224 206 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 GSPT1P15170 499 aaKnown RBP4.4□□□□□ -1.71
USP54-217ENST00000498213 MX1P20591 662 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 ITPKBP27987 946 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 CD52P31358 61 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 SREBF1P36956 1147 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 GPR3P46089 330 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 RPS9P46781 194 aaKnown RBP4.4□□□□□ -1.71
USP54-217ENST00000498213 CXCL12P48061 93 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 SLC26A2P50443 739 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 HSD17B4P51659 736 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 PTTG1IPP53801 180 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 HTR4Q13639 388 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 BEAN1Q3B7T3 259 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 RNF187Q5TA31 235 aaPredicted RBP4.4□□□□□ -1.71
USP54-217ENST00000498213 HECTD2Q5U5R9 776 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 AFMIDQ63HM1 303 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 METTL7BQ6UX53 244 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 STOX1Q6ZVD7 989 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 Q6ZVL8 140 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 MED25Q71SY5 747 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 KCNK18Q7Z418 384 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 KBTBD6Q86V97 674 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 SLC22A17Q8WUG5 538 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 STON2Q8WXE9 905 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 GLG1Q92896 1179 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 CAVIN3Q969G5 261 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 RMDN3Q96TC7 470 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 AGAP2Q99490 1192 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 MAP3K14Q99558 947 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 MRI1Q9BV20 369 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 KRT23Q9C075 422 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 RNPEPQ9H4A4 650 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 LDAHQ9H6V9 325 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 IL17RBQ9NRM6 502 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 SETD4Q9NVD3 440 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 ANKMY1Q9P2S6 941 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 EPS15L1Q9UBC2 864 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 AJAP1Q9UKB5 411 aaPredicted RBP4.4□□□□□ -1.71
USP54-217ENST00000498213 PACSIN3Q9UKS6 424 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 LZTS1Q9Y250 596 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 NOX1Q9Y5S8 564 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 GPR45Q9Y5Y3 372 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 HS3ST4Q9Y661 456 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 PCSK5Q92824 1860 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 MYH8P13535 1937 aa4.4□□□□□ -1.71
USP54-217ENST00000498213 RALGAPA1Q6GYQ0 2036 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 PLXNA4Q9HCM2 1894 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 TMEM200CA6NKL6 621 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 DRGXA6NNA5 263 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 ZNF185O15231 689 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 GPR32O75388 356 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 C1RP00736 705 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 POMCP01189 267 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 SMIM10L2AP0DMW4 78 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 SMIM10L2BP0DMW5 78 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 LAMP2P13473 410 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 SCG2P13521 617 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 ALOX15P16050 662 aaPredicted RBP4.39□□□□□ -1.71
USP54-217ENST00000498213 KRT4P19013 534 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 BMP5P22003 454 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 ABCG1P45844 678 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 PXNP49023 591 aaPredicted RBP4.39□□□□□ -1.71
USP54-217ENST00000498213 CSRP3P50461 194 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 CCR3P51677 355 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 FAM193AP78312 1265 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 CREMQ03060 361 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 KRT17Q04695 432 aa4.39□□□□□ -1.71
USP54-217ENST00000498213 KLF1Q13351 362 aaPredicted RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms