RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SLC25A52Q3SY17 297 aa16.96■□□□□ 0.3
CCDC88B-210ENST00000494566 OR52E8Q6IFG1 317 aa16.96■□□□□ 0.3
CCDC88B-210ENST00000494566 ZNF184Q99676 751 aaPredicted RBP16.96■□□□□ 0.3
CCDC88B-210ENST00000494566 TLE6Q9H808 572 aa16.96■□□□□ 0.3
CCDC88B-210ENST00000494566 GDAP2Q9NXN4 497 aa16.96■□□□□ 0.3
CCDC88B-210ENST00000494566 GOLGA8QA0A0J9YX86 632 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 GOLGA8OA6NCC3 632 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 MYADML2A6NDP7 307 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 GOLGA8NF8WBI6 632 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 XPO1O14980 1071 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 DGKIO75912 1065 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 CELF2O95319 508 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 PROCP04070 461 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 SERPINB6P35237 376 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 INHBEP58166 350 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 USP4Q13107 963 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 STX3Q13277 289 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 SV2CQ496J9 727 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 FASTKD1Q53R41 847 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 SIX6OS1Q8N1H7 587 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 EDEM1Q92611 657 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 GBP5Q96PP8 586 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 PARK7Q99497 189 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 DUSP16Q9BY84 665 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 ULBP1Q9BZM6 244 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 PCDHA11Q9Y5I1 949 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 PDCD11Q14690 1871 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 A0A0A0MRY4 1105 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 MYOCOSA0A1B0GUC4 107 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 YJEFN3A6XGL0 299 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 E7ENQ6 273 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 NEMP1O14524 444 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 NPR3P17342 541 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 DEUP1Q05D60 604 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 CMC1Q7Z7K0 106 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 MCUQ8NE86 351 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 SPATA13Q96N96 652 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 OLFM3Q96PB7 478 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 TRIM4Q9C037 500 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 VCXQ9H320 206 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 SYBUQ9NX95 663 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 NDE1Q9NXR1 346 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 DDX43Q9NXZ2 648 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 LAMA2P24043 3122 aaKnown RBP16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 SHROOM3Q8TF72 1996 aa16.95■□□□□ 0.3
CCDC88B-210ENST00000494566 MYBPHLA2RUH7 354 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 FAM159BA6NKW6 160 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 USP17L7P0C7H9 530 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 ZNF865P0CJ78 1059 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 MAGEA6P43360 314 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 ADAM17P78536 824 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 SEMA5AQ13591 1074 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 EFHC1Q5JVL4 640 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 SPRYD7Q5W111 196 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 AP1ARQ63HQ0 302 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 C3orf58Q8NDZ4 430 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 TNIP3Q96KP6 325 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 HSFY1Q96LI6 401 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 GAD1Q99259 594 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 APOL2Q9BQE5 337 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 CRTAC1Q9NQ79 661 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 CASTOR2A6NHX0 329 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 RNASEH1O60930 286 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 FYNP06241 537 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 ERVK-10P10266 1014 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 ZFXP17010 805 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 N4BP2L1Q5TBK1 243 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 STRADAQ7RTN6 431 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 CHSY1Q86X52 802 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 ZNF567Q8N184 647 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 HASPINQ8TF76 798 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 ZNF778Q96MU6 729 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 MIOSQ9NXC5 875 aa16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 STX18Q9P2W9 335 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 HBS1LQ9Y450 684 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-210ENST00000494566 E9PBE3 544 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 CLGNO14967 610 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 KLHL41O60662 606 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 KRT38O76015 456 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 LMNAP02545 664 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 TPSB2P20231 275 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 ACADSBP45954 432 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 CCR10P46092 362 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 NR2C2P49116 596 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 CLCNKBP51801 687 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 TPSAB1Q15661 275 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 PID1Q7Z2X4 250 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 HPS6Q86YV9 775 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 STKLD1Q8NE28 680 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 XAB2Q9HCS7 855 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 EEF2KO00418 725 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 TRDMT1O14717 391 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 KCNE1P15382 129 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 WASHC5Q12768 1159 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 ARNTL2Q8WYA1 636 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 WNT8BQ93098 351 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 MARK4Q96L34 752 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 FAM124BQ9H5Z6 455 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 UBP1Q9NZI7 540 aa16.93■□□□□ 0.3
CCDC88B-210ENST00000494566 CPSF2Q9P2I0 782 aaKnown RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms